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The map label for this gene is secY [H]

Identifier: 23097594

GI number: 23097594

Start: 150540

End: 151832

Strand: Direct

Name: secY [H]

Synonym: OB0139

Alternate gene names: 23097594

Gene position: 150540-151832 (Clockwise)

Preceding gene: 23097593

Following gene: 23097595

Centisome position: 4.15

GC content: 40.53

Gene sequence:

>1293_bases
TTGTTTCGTACACTCTCCAATTTTATGCGCGTAGCTGATATTAGAAATAAGATCATTTTCACATTATTAATGTTGATTGT
ATTCCGAATTGGTACATTTATTCCAGTGCCGTTCACGGATAAAGCTGCAATCGACTTTATGAACGAGCAAAATGTATTTG
GCTTCTTAAACACATTTGGTGGTGGAGCCTTGCAAAACTTTTCTATCTTTGCGATGGGGATAATGCCTTATATTACAGCA
TCCATCATCATGCAGCTACTGCAAATGGATGTAGTACCTAAGTTTGCAGAATGGAAAAAACAAGGGGAAATGGGACGTAA
GAAAATTGCTCAAGTAACTCGTTACGGGACAATTGTTCTTGCATTCGTTCAAGCAATTGCGATGTCAGTCGGCTTCAATG
CGATGGCAGGCGGCATGTTGATTGCAGACCCTAATGTTATGAAGTTCTTAACGATCGCGATCGTGCTAACTGGCGGTACG
GCATTCCTTATGTGGATGGGTGAGCAAATTACAGCACATGGAGTGGGTAATGGTATATCTATCATTATCTTCGCTGGTAT
CGTAGCCGCTGTTCCTAACGGTGTTGGACAGTTATACTCCCAGTATTTCTCTAATCCTGGAAATGACTTGTTTATTAACA
TCGTTATTGTTGCGCTAATTGCTCTTGTAGCAGTTGCGGTAACTGTTGGGGTTATATTTGTAAACCAAGCATTGCGTAAG
ATTCCGGTTCAATATGCTAAAAAGCTAGTGAATCGTTCTCCAGTAGGTGGCCAATCTACTCACCTACCAATTAAGGTGAA
TGCTGCAGGGGTTATTCCAGTAATCTTTGCAATTGCATTTATGATGGCACCGACGACAATTGCTGGTTTCTTTGAAGGAA
ATCAAGTAGCAGATTTCATCACTAGAACATTTGATTATACTTCCCCTGTGGGAATGATCATCTATGTAGCGATGATAATT
GCTTTCACATATTTCTATACATTTGTTCAGGTGAATCCAGAGCAAATGTCTGAGAATCTACAAAAACAAGGTGGATATAT
TCCAGGAATTCGTCCGGGTCATAACACGGAAGAATACTTGACTCGCGTAATTAACAGATTAACTTTTGTTGGCGCACTGT
TCTTAGCGGTTGTCTCTGTATTCCCGATGATCTTAGGTAGTCTTGCGAATCTACCTTCTGCAGTACAAATTGGCGGCACA
AGCTTACTAATCGTTGTAGGTGTTGCATTACAGACAATGAAGCAATTAGAAGGACAGCTCGTGAAGCGTCACTACAAAGG
ATTCATTAAGTAA

Upstream 100 bases:

>100_bases
GGTACTTTAGAAAAGAAACTAACAGTAAAAGCTCATAAGTTCTCCGCTTCTGCAAAAGAAGCGATTGAGACAGCGGGCGG
TCAATCTGAGGTGATTTAAT

Downstream 100 bases:

>100_bases
TTAAGAAGCCAACAAAAGCGAGGGGAAGCAATTGAATTTGATTTTGATGGGCTTACCTGGTGCTGGTAAAGGCACACAGG
CTGCGAAAATTAATGAAAAG

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MFRTLSNFMRVADIRNKIIFTLLMLIVFRIGTFIPVPFTDKAAIDFMNEQNVFGFLNTFGGGALQNFSIFAMGIMPYITA
SIIMQLLQMDVVPKFAEWKKQGEMGRKKIAQVTRYGTIVLAFVQAIAMSVGFNAMAGGMLIADPNVMKFLTIAIVLTGGT
AFLMWMGEQITAHGVGNGISIIIFAGIVAAVPNGVGQLYSQYFSNPGNDLFINIVIVALIALVAVAVTVGVIFVNQALRK
IPVQYAKKLVNRSPVGGQSTHLPIKVNAAGVIPVIFAIAFMMAPTTIAGFFEGNQVADFITRTFDYTSPVGMIIYVAMII
AFTYFYTFVQVNPEQMSENLQKQGGYIPGIRPGHNTEEYLTRVINRLTFVGALFLAVVSVFPMILGSLANLPSAVQIGGT
SLLIVVGVALQTMKQLEGQLVKRHYKGFIK

Sequences:

>Translated_430_residues
MFRTLSNFMRVADIRNKIIFTLLMLIVFRIGTFIPVPFTDKAAIDFMNEQNVFGFLNTFGGGALQNFSIFAMGIMPYITA
SIIMQLLQMDVVPKFAEWKKQGEMGRKKIAQVTRYGTIVLAFVQAIAMSVGFNAMAGGMLIADPNVMKFLTIAIVLTGGT
AFLMWMGEQITAHGVGNGISIIIFAGIVAAVPNGVGQLYSQYFSNPGNDLFINIVIVALIALVAVAVTVGVIFVNQALRK
IPVQYAKKLVNRSPVGGQSTHLPIKVNAAGVIPVIFAIAFMMAPTTIAGFFEGNQVADFITRTFDYTSPVGMIIYVAMII
AFTYFYTFVQVNPEQMSENLQKQGGYIPGIRPGHNTEEYLTRVINRLTFVGALFLAVVSVFPMILGSLANLPSAVQIGGT
SLLIVVGVALQTMKQLEGQLVKRHYKGFIK
>Mature_430_residues
MFRTLSNFMRVADIRNKIIFTLLMLIVFRIGTFIPVPFTDKAAIDFMNEQNVFGFLNTFGGGALQNFSIFAMGIMPYITA
SIIMQLLQMDVVPKFAEWKKQGEMGRKKIAQVTRYGTIVLAFVQAIAMSVGFNAMAGGMLIADPNVMKFLTIAIVLTGGT
AFLMWMGEQITAHGVGNGISIIIFAGIVAAVPNGVGQLYSQYFSNPGNDLFINIVIVALIALVAVAVTVGVIFVNQALRK
IPVQYAKKLVNRSPVGGQSTHLPIKVNAAGVIPVIFAIAFMMAPTTIAGFFEGNQVADFITRTFDYTSPVGMIIYVAMII
AFTYFYTFVQVNPEQMSENLQKQGGYIPGIRPGHNTEEYLTRVINRLTFVGALFLAVVSVFPMILGSLANLPSAVQIGGT
SLLIVVGVALQTMKQLEGQLVKRHYKGFIK

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=427, Percent_Identity=43.0913348946136, Blast_Score=286, Evalue=1e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 46861; Mature: 46861

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCC
>Mature Secondary Structure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HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1435726 [H]