Click here to switch to the map view.

The map label for this gene is rpoC

Identifier: 70732888

GI number:

Start: 6367268

End: 6371467

Strand: Reverse

Name: rpoC

Synonym: PFL_5588

Alternate gene names: NA

Gene position: NA

Preceding gene: 70732889

Following gene: 70732887

Centisome position: NA

GC content: NA

Gene sequence:

>4200_bases
TTGAAAGACCTACTGAATTTGCTGAAAAACCAGGGTCAAGTCGAAGAGTTCGACGCCATCCGTATCGGATTGGCCTCGCC
TGAGATGATCCGTTCGTGGTCGTTCGGTGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACGTTCAAGCCTGAGCGTG
ACGGCCTGTTCTGCGCCAAGATCTTTGGCCCGGTAAAGGATTACGAGTGCCTGTGCGGTAAGTACAAGCGCTTGAAGCAT
CGCGGCGTGATCTGCGAGAAGTGCGGCGTTGAAGTTGCGCTGGCCAAGGTTCGTCGTGAGCGCATGGCGCACATCGAACT
GGCTTCGCCGGTTGCCCACATCTGGTTCCTGAAATCGCTGCCGTCCCGTATCGGCTTGCTGATGGACATGACTCTGCGTG
ATATCGAGCGCGTTCTCTACTTCGAGAGCTACGTCGTTATCGATCCAGGCATGACCACCCTTGAAAAAGGTCAGCTGCTG
AACGATGAGCAGTACTTCGAAGCGCTGGAAGAGTTCGGCGATGACTTCGACGCCCGCATGGGTGCCGAGGCTGTCCGCGA
GCTGCTGCACGCTATCGACCTGGAGCACGAGATTGGCCGTCTGCGTGAAGAGATTCCGCAAACCAACTCGGAAACCAAGA
TCAAGAAACTGTCCAAGCGTCTGAAGTTGATGGAAGCCTTCCAGGGTTCCGGCAACCTGCCAGAGTGGATGGTGCTGACC
GTTCTGCCGGTTCTGCCGCCAGATCTGCGTCCACTGGTCCCGCTGGATGGCGGTCGTTTCGCGACTTCTGACCTCAACGA
TCTGTATCGTCGAGTGATCAACCGTAACAACCGTTTGAAGCGCCTGCTGGATCTGTCCGCTCCGGACATCATCGTGCGCA
ACGAAAAGCGTATGTTGCAGGAAGCTGTCGATGCACTGCTCGACAACGGTCGTCGTGGCCGCGCTATCACCGGTTCCAAC
AAGCGTCCTCTGAAATCCCTGGCTGACATGATCAAGGGTAAGCAAGGTCGTTTCCGTCAGAACTTGCTCGGTAAGCGTGT
TGACTACTCCGGTCGTTCGGTAATTACCGTAGGTCCGACCCTGCGTCTGCACCAGTGCGGTCTGCCGAAGAAGATGGCTC
TCGAGCTGTTCAAACCGTTCATCTTCGGCAAGTTGGAAATGCGTGGCCTGGCCACCACCATCAAAGCCGCCAAGAAGATG
GTCGAGCGCGAACTGCCAGAGGTTTGGGACGTTCTCGCTGAAGTGATCCGTGAACACCCGGTTCTCCTCAACCGTGCACC
GACCCTTCACCGTCTGGGTATCCAGGCGTTTGAACCGGTACTGATCGAAGGTAAGGCTATCCAGCTGCACCCTCTGGTCT
GTGCTGCGTACAACGCCGACTTCGACGGCGACCAAATGGCCGTGCACGTGCCGCTGACACTGGAAGCCCAGTTGGAAGCG
CGTGCGTTGATGATGTCGACCAACAACATTCTGTCGCCAGCCAACGGTGAGCCAATCATCGTTCCGTCGCAGGACGTTGT
ATTGGGTCTGTACTACATGACCCGTGAAGCGATCAACGCCAAGGGCGAAGGGCGTGTGTTCGCGGACCTGCAGGAAGTCG
ACCGCGTATTCCGCGCCGGCGAAGCGGCTCTGCACGCCAAGATCAAGGTTCGCATCAGCGAAACCGTCAATGATCGTGAT
GGCGGCAGCGTGAGCGCCACCCGTATCGTCGACACCACTGTCGGCCGTGCTCTGCTGTTCCAGGTTGTGCCGAAGGGCCT
GTCGTTCGACGTCGTCAACCTGCCGATGAAGAAGAAGGCGATCTCCAAGCTGATCAACCAGTGCTACCGCGTGGTTGGTC
TGAAAGAGACCGTGATCTTCGCTGACCAGTTGATGTACACCGGTTTCGCTTACTCGACCATTTCCGGCGTTTCCATCGGT
GTTAACGACTTCGTTATCCCGGATGAAAAAGCTCGCATCATCGGTGCTGCCACCGACGAAGTGAAAGAAATCGAGAGCCA
GTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAAGTGATCGACCTTTGGTCGAAGGCCAACGACGAAGTAT
CCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCAATGGCGACGAAGTCGAGCAAGAATCGTTCAAC
TCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTCCGCAGCACAGATCCGTCAGCTGGCCGGTATGCGTGGTCTGAT
GGCCAAGCCGGACGGCTCCATCATCGAAACGCCGATTACTGCGAACTTCCGTGAAGGTCTGAGCGTACTCCAGTACTTCA
TCTCGACTCACGGTGCTCGTAAAGGTCTGGCGGATACCGCGTTGAAAACTGCGAACTCCGGTTACCTGACTCGTCGTCTG
GTGGACGTTGCGCAGGATCTGGTTGTAACCGAGATCGATTGCGGCACCGAACACGGCCTGCTGATGACTCCGCACATTGA
AGGCGGCGACGTTGTAGAGCCACTGGGTGAGCGCGTATTGGGTCGTGTTATCGCCCGTGACGTATTCAAGCCGGGTACCG
AGGACGTCATCGTTCCTGCCGGCACCCTGGTAGACGAAAAGTGGGTTGAATTCATCGAGCTCAACAGCATCGACGAAGTG
ATCGTGCGTTCGCCGATCAGTTGCGAAACCCGCTATGGCATTTGCGCCAAGTGCTACGGCCGTGACCTGGCTCGTGGTCA
CCAGGTGAACATTGGTGAGGCGGTCGGCGTTATCGCTGCCCAATCCATCGGTGAGCCGGGTACCCAGCTGACCATGCGTA
CGTTCCACATTGGTGGTGCGGCAAGCCGTACTTCCGCAGCCGACAGCGTTCAGGTGAAGAATGGCGGTACCGTCCGTCTG
CACAACCTGAAGCACGTTGAGCGTGTGGATGGCCACCTGGTTGCTGTGTCCCGTTCCGGTGAGCTGGCAATCGCTGATGA
CTTCGGTCGTGAGCGCGAGCGTTACAAGCTGCCGTACGGTGCTGTGATTTCGGTTAAAGAAGGTGACAAGGTCGACGCTG
GCGCTATCGTGGCCAAGTGGGATCCGCACACTCACCCGATCGTTACCGAAATGAAAGGTACCGTGACCTACGTGGGCATG
GAAGAAGGCATCACGATCAAGCGTCAGACTGACGAATTGACCGGTATGACCAACATTGAAGTGCTTGACGTCAAAGACCG
TCCAGCTGCCGGCAAGGACATCCGTCCTGCTGTGAAGATGGTGGGTATGGATGGCAAGGATCTGCTGCTGCCAGGTACCG
ACGTACCGGCACAGTACTTCCTGCCGGCTAACGCCCTGGTCGGTGTTGCCGACGGTGCGCAGATTGCGATCGGTGATGTT
ATCGCTCGTATTCCGCAAGAAACTTCGAAGACCCGTGACATCACCGGTGGTCTGCCGCGTGTTGCCGACCTGTTCGAAGC
TCGTCGTCCGAAGGAGGCGTCGATTCTGGCTGAAGTCAGCGGCACCATCGCGTTCGGTAAAGAGACCAAGGGCAAGCGCC
GTCTGGTCATTACCCCGAACGACGGCAGCGATCCGTATGAAGAGCTGATTCCGAAGTGGCGTCACCTGAACGTCTTCGAA
GGCGAACAAGTGAACCGCGGCGAAGTTATCTCCGACGGTCCGAGCGATCCACACGACATCCTGCGTCTGCTGGGTGTCAG
TGCGCTGGCCAAGTACATCGTCAACGAGATCCAGGACGTTTACCGTCTGCAAGGCGTGAAGATCAACGACAAGCACATCG
AGACCATCCTGCGTCAGATGCTGCGTAAGGTTGAAATCGCCGAGTCCGGCGACTCCAGCTTCATCAAGGGCGACCAGATG
GAACTGACTCACGTACTGGTAGAAAACGAGCGTCTGAGCACCGAAGACAAGTTCGTCGCCAAGTTCACCCGCGTACTGCT
GGGTATCACCAAGGCGTCCTTGTCCACCGAATCGTTCATCTCGGCGGCCTCTTTCCAAGAGACCACCCGTGTACTGACCG
AAGCGGCGGTAACTGGCAAGCGCGACTACCTGCGTGGTCTGAAAGAAAACGTGGTCGTGGGTCGTCTGATCCCGGCCGGT
ACTGGCCTGGCGTACCACAGCGAGCGTAAGCGTCGTCGTGATGCAGACAAGCCGCTGCGCGTAAGCGCAAGCGAAGTCGA
AGCAGCACTGACTGAAGCGCTGAACTCCAGCGGTAATTGA

Upstream 100 bases:

>100_bases
TCCCTCGGCATCGATATCGATCTGGAAACCGAATAACACGTGACGCGAATCGAGAGCGGGGCAGGATTGCCCGCTCTCTG
CTCCGCCAGGAGGAAAGGCC

Downstream 100 bases:

>100_bases
GGTCTGCAGTAGATTGAGACGGGGCCCCGGCTTTTTCGATTGAGAATCAAGACACTTTTTGTCGAGGTTCGCTGATCGGG
GAGGCCGGGGCCTTGCCTTG

Product: DNA-directed RNA polymerase subunit beta'

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1399_residues
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKRLKH
RGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSLPSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLL
NDEQYFEALEEFGDDFDARMGAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSN
KRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKM
VERELPEVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAGEAALHAKIKVRISETVNDRD
GGSVSATRIVDTTVGRALLFQVVPKGLSFDVVNLPMKKKAISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIG
VNDFVIPDEKARIIGAATDEVKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRNGDEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGARKGLADTALKTANSGYLTRRL
VDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVLGRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEV
IVRSPISCETRYGICAKCYGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKWDPHTHPIVTEMKGTVTYVGM
EEGITIKRQTDELTGMTNIEVLDVKDRPAAGKDIRPAVKMVGMDGKDLLLPGTDVPAQYFLPANALVGVADGAQIAIGDV
IARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSSFIKGDQM
ELTHVLVENERLSTEDKFVAKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAG
TGLAYHSERKRRRDADKPLRVSASEVEAALTEALNSSGN

Sequences:
NA

Specific function: NA

COG id: COG0086

COG function: function code K; DNA-directed RNA polymerase, beta' subunit/160 kD subunit

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA