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The map label for this gene is rafQ

Identifier: 22127837

GI number: 22127837

Start: 4424970

End: 4425950

Strand: Reverse

Name: rafQ

Synonym: y3967

Alternate gene names: NA

Gene position: 4425950-4424970 (Counterclockwise)

Preceding gene: 22127838

Following gene: 22127831

Centisome position: 96.2

GC content: 51.78

Gene sequence:

>981_bases
ATGCAGCGCATCTTGGTGATCCGAATTGATTTTCTCGGCGATATGGTTTGTACCACGGCGCTATTACATGCGCTGAAACA
ACGTTGGCCAGCAGCAGAAATCCACGTATTAGCGAATAAATATAATCAATCCGTGCTGGCACGTAATCCTGATGTCAGTG
CGGTCCACACTTATGTTTACAGCAAACAATGTGAGAGAAACCAGCGGCCAGGCCGGCTCATGGCCCTTTTTGATCGGCTA
GCATTAATTTGGCGGCTACGGCGTTTAGGCTTCGATCTGCTGCTCATTCCCAATGGTGGCATGAACAAAAACAGTATTCA
GTTTGCCAAACAGCTCAATGTGGCAGATCGCCGTTGGCATACGGCTGAAACTGAGTTTGACGACCGTAATCCTGAACATG
TTGCCACGCGGCCAATCCGTCACGAAGCCCTCTCGGGATTTGCACTGATGCCTGAACTGGGGCGGGTAGACATCGAAACA
CTTAAGCTGCATGTCTACCCAGAGCCACAATTGCAGGCAAAATGGCAGGCCGATCTTGGGGGAAAAGACCGGCCACGTGT
CGGGCTATTTATCTCTAATAAATCCGCCCAACGGCGCTGGAGTTGGGATAAGTGGCGTCAATTGGCATTGAAACTCAATG
CACAGGCTGAATTGCTCATTTTTCATGATCCAGCAGAACAACCATCCGAGCAGCAATTAGCGGGGCTAACCGCCCGTTGT
CTGTCAACGCCATCCACTGACGACCTGATGGCGGCGATGAGCCAGTTGGATTTGGTGATTTCCGCCGATAGCGCACCGGT
ACATATCGGCTCCGCATTGCAAATACCCGTGGTGGCCTTGTTTGAATCCCGGCCAGAGAAGTACCTACGCTGGTATCCGC
TAGGTGTTCGCCATGTGCTCGTCCATGCCGGGCCACAAGTTGAAGACATCCATGTTGATGCTGTCGAGTCTGCCGCCCGT
TCACTGTTGACCACAGATTAA

Upstream 100 bases:

>100_bases
CTGAATAAATAAGTTACAAATACTTATTCATTACACTGTATTTCCCTGGCACATATAAGGTTTAATTAAGCCCTGAAGCA
ATTAATGTGAATGGACTTAA

Downstream 100 bases:

>100_bases
TAACGCCATAGATCAGGGCCGGAACACCGGCCTATCACCCAGAATCGTCGCCCGATGCATCACCCGCCGCTGCGGTAGGT
AGTCGGCATTGGCGTAATGC

Product: LPS biosynthetic enzyme

Products: NA

Alternate protein names: Sugar Transferase; Heptosyliii Transferase; Lipopolysaccharide Heptosyltransferase III; ADP-Heptose; Heptosyl Transferase; Family 9 Glycosyl Transferase

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MQRILVIRIDFLGDMVCTTALLHALKQRWPAAEIHVLANKYNQSVLARNPDVSAVHTYVYSKQCERNQRPGRLMALFDRL
ALIWRLRRLGFDLLLIPNGGMNKNSIQFAKQLNVADRRWHTAETEFDDRNPEHVATRPIRHEALSGFALMPELGRVDIET
LKLHVYPEPQLQAKWQADLGGKDRPRVGLFISNKSAQRRWSWDKWRQLALKLNAQAELLIFHDPAEQPSEQQLAGLTARC
LSTPSTDDLMAAMSQLDLVISADSAPVHIGSALQIPVVALFESRPEKYLRWYPLGVRHVLVHAGPQVEDIHVDAVESAAR
SLLTTD

Sequences:

>Translated_326_residues
MQRILVIRIDFLGDMVCTTALLHALKQRWPAAEIHVLANKYNQSVLARNPDVSAVHTYVYSKQCERNQRPGRLMALFDRL
ALIWRLRRLGFDLLLIPNGGMNKNSIQFAKQLNVADRRWHTAETEFDDRNPEHVATRPIRHEALSGFALMPELGRVDIET
LKLHVYPEPQLQAKWQADLGGKDRPRVGLFISNKSAQRRWSWDKWRQLALKLNAQAELLIFHDPAEQPSEQQLAGLTARC
LSTPSTDDLMAAMSQLDLVISADSAPVHIGSALQIPVVALFESRPEKYLRWYPLGVRHVLVHAGPQVEDIHVDAVESAAR
SLLTTD
>Mature_326_residues
MQRILVIRIDFLGDMVCTTALLHALKQRWPAAEIHVLANKYNQSVLARNPDVSAVHTYVYSKQCERNQRPGRLMALFDRL
ALIWRLRRLGFDLLLIPNGGMNKNSIQFAKQLNVADRRWHTAETEFDDRNPEHVATRPIRHEALSGFALMPELGRVDIET
LKLHVYPEPQLQAKWQADLGGKDRPRVGLFISNKSAQRRWSWDKWRQLALKLNAQAELLIFHDPAEQPSEQQLAGLTARC
LSTPSTDDLMAAMSQLDLVISADSAPVHIGSALQIPVVALFESRPEKYLRWYPLGVRHVLVHAGPQVEDIHVDAVESAAR
SLLTTD

Specific function: Unknown

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36986; Mature: 36986

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRILVIRIDFLGDMVCTTALLHALKQRWPAAEIHVLANKYNQSVLARNPDVSAVHTYVY
CCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHEEEEHHHHCCHHCCCCCCHHHHHHHHH
SKQCERNQRPGRLMALFDRLALIWRLRRLGFDLLLIPNGGMNKNSIQFAKQLNVADRRWH
HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCHHHHCCC
TAETEFDDRNPEHVATRPIRHEALSGFALMPELGRVDIETLKLHVYPEPQLQAKWQADLG
CCCCCCCCCCCCHHHCCCHHHHHHCCEEECCCCCCCEEEEEEEEECCCCCCCEEEECCCC
GKDRPRVGLFISNKSAQRRWSWDKWRQLALKLNAQAELLIFHDPAEQPSEQQLAGLTARC
CCCCCEEEEEEECCCCHHCCCHHHHHHHHHEECCCEEEEEEECCCCCCCHHHHHHHHHHH
LSTPSTDDLMAAMSQLDLVISADSAPVHIGSALQIPVVALFESRPEKYLRWYPLGVRHVL
HCCCCHHHHHHHHHHCEEEEECCCCCEEECCCCCCHHHEEHHCCCHHHHEEECCCCEEEE
VHAGPQVEDIHVDAVESAARSLLTTD
EECCCCEEEEEHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQRILVIRIDFLGDMVCTTALLHALKQRWPAAEIHVLANKYNQSVLARNPDVSAVHTYVY
CCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHEEEEHHHHCCHHCCCCCCHHHHHHHHH
SKQCERNQRPGRLMALFDRLALIWRLRRLGFDLLLIPNGGMNKNSIQFAKQLNVADRRWH
HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCHHHHCCC
TAETEFDDRNPEHVATRPIRHEALSGFALMPELGRVDIETLKLHVYPEPQLQAKWQADLG
CCCCCCCCCCCCHHHCCCHHHHHHCCEEECCCCCCCEEEEEEEEECCCCCCCEEEECCCC
GKDRPRVGLFISNKSAQRRWSWDKWRQLALKLNAQAELLIFHDPAEQPSEQQLAGLTARC
CCCCCEEEEEEECCCCHHCCCHHHHHHHHHEECCCEEEEEEECCCCCCCHHHHHHHHHHH
LSTPSTDDLMAAMSQLDLVISADSAPVHIGSALQIPVVALFESRPEKYLRWYPLGVRHVL
HCCCCHHHHHHHHHHCEEEEECCCCCEEECCCCCCHHHEEHHCCCHHHHEEECCCCEEEE
VHAGPQVEDIHVDAVESAARSLLTTD
EECCCCEEEEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA