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The map label for this gene is yggR [H]

Identifier: 22127202

GI number: 22127202

Start: 3659626

End: 3660756

Strand: Reverse

Name: yggR [H]

Synonym: y3326

Alternate gene names: 22127202

Gene position: 3660756-3659626 (Counterclockwise)

Preceding gene: 22127209

Following gene: 22127195

Centisome position: 79.57

GC content: 47.66

Gene sequence:

>1131_bases
TTGGATATGGATTTCACAAGCCTGAATAATCAACATTCAGATCTGAATAACCCCGTGTTTAGCCGTATAAAAGCCAAACG
CATTGATTTAGAAAACCCTGACCTTGCCAGTGATGGCTTTAACAAACAGGATTTTGCCAATAAGGTGGCGGCTAGTGTAG
ATCATAATGCTTCAGATCTGCACCTCTGTACCGGTTTTCACCCCGTATTACGTATCGATGGCGAGCTAAAAACCTTTACT
GACTGGCCGAAGGTCACTGCTGGTTGGTTAAATGGGCTACGTCGGCATATGTTGAGTGACGCACAAGAAAGCCGATTACA
GCAACAGGGGCAGGTTGACTGTGCCTATACCACCGTGGGCAGTCAAAGGTTACGGGCGAATATTTTCCAGCAACGACAGG
GCCAATCCATTGCTTTTCGCATTATTCCTGCTATTTGTCCGTCACTGACACAATTGGCGGCACCACCTATTTTGAACCAA
TTGATTCAACAGGATAATGGACTAATTCTGGTAACGGGGGCGACGGGCAGCGGTAAATCGACGACGCTGAGTGCCATGAT
AAGCGCGATTAATCAGCAACAGGCACGACATATTATTACCCTTGAGGACCCGATTGAATTTATTCATAGCAGTCAATCAT
GTTTGATCCAGCAACGAGAGCTTGGTCGCCATACTCACTGTTTTAGTCGTGCCCTGAATGGGGCATTACGTCAGGATCCA
GATATTATTTTACTCGGAGAGTTACGGGATCTGGAGACTATCCGATTAGCGCTGACAGCAGCAGAAACCGGGCATCTGGT
GCTAGCCACATTGCATACCCGCACGGCAACACAGGCTATTGATCGGCTGATTGATGTTTTTCCTCCTGAGGAGAAAGCCG
TTATACGGACGCAACTGGCTGCCAGTTTACGCGGTGTTATCACGCAGAAATTGTGTCGTCAAAATGGCGGTGGGCGTATA
GCTGTATTTGAGATACTCACGCAAACCACGGCAGTCAGCCATTTGATCCGAGAAGGTAAAACCTATCAATTACCAACCGT
GATACAGGCCGGAGGGCAATGGGGGATGCAAACCTTTGAGCAAAGTATCGCACAACGGCAAAAACAGGGGGTTTTGGCTA
TCAATCACTGA

Upstream 100 bases:

>100_bases
AACTTCTTCTGGAGAGCGCCCGCAATTGTGTGCAGCCGTTGCGATCCGCGCTCTGACATCCTGTAGATTCTGTTGGATAG
TACTCATATGGACCCAGGAG

Downstream 100 bases:

>100_bases
TGGGGGAGGCACCGCTGACACTGTAGTTATTTCAAGGGAGAAGGTGATGCAATAAATTAACCCGGATCGGATGATCCGGG
TCAAGCAGGCGGCTTATTTT

Product: protein transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MDMDFTSLNNQHSDLNNPVFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDLHLCTGFHPVLRIDGELKTFT
DWPKVTAGWLNGLRRHMLSDAQESRLQQQGQVDCAYTTVGSQRLRANIFQQRQGQSIAFRIIPAICPSLTQLAAPPILNQ
LIQQDNGLILVTGATGSGKSTTLSAMISAINQQQARHIITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDP
DIILLGELRDLETIRLALTAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLAASLRGVITQKLCRQNGGGRI
AVFEILTQTTAVSHLIREGKTYQLPTVIQAGGQWGMQTFEQSIAQRQKQGVLAINH

Sequences:

>Translated_376_residues
MDMDFTSLNNQHSDLNNPVFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDLHLCTGFHPVLRIDGELKTFT
DWPKVTAGWLNGLRRHMLSDAQESRLQQQGQVDCAYTTVGSQRLRANIFQQRQGQSIAFRIIPAICPSLTQLAAPPILNQ
LIQQDNGLILVTGATGSGKSTTLSAMISAINQQQARHIITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDP
DIILLGELRDLETIRLALTAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLAASLRGVITQKLCRQNGGGRI
AVFEILTQTTAVSHLIREGKTYQLPTVIQAGGQWGMQTFEQSIAQRQKQGVLAINH
>Mature_376_residues
MDMDFTSLNNQHSDLNNPVFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDLHLCTGFHPVLRIDGELKTFT
DWPKVTAGWLNGLRRHMLSDAQESRLQQQGQVDCAYTTVGSQRLRANIFQQRQGQSIAFRIIPAICPSLTQLAAPPILNQ
LIQQDNGLILVTGATGSGKSTTLSAMISAINQQQARHIITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDP
DIILLGELRDLETIRLALTAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLAASLRGVITQKLCRQNGGGRI
AVFEILTQTTAVSHLIREGKTYQLPTVIQAGGQWGMQTFEQSIAQRQKQGVLAINH

Specific function: Unknown

COG id: COG2805

COG function: function code NU; Tfp pilus assembly protein, pilus retraction ATPase PilT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI87082188, Length=325, Percent_Identity=56.3076923076923, Blast_Score=350, Evalue=1e-97,
Organism=Escherichia coli, GI1789723, Length=278, Percent_Identity=36.3309352517986, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1786296, Length=277, Percent_Identity=34.2960288808664, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006321
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 41537; Mature: 41537

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMDFTSLNNQHSDLNNPVFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDL
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCE
HLCTGFHPVLRIDGELKTFTDWPKVTAGWLNGLRRHMLSDAQESRLQQQGQVDCAYTTVG
EEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
SQRLRANIFQQRQGQSIAFRIIPAICPSLTQLAAPPILNQLIQQDNGLILVTGATGSGKS
HHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCH
TTLSAMISAINQQQARHIITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDP
HHHHHHHHHHHHHHCCEEEEEHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCHHHCCC
DIILLGELRDLETIRLALTAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLA
CEEEECCCCCHHHHHEEEEECCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ASLRGVITQKLCRQNGGGRIAVFEILTQTTAVSHLIREGKTYQLPTVIQAGGQWGMQTFE
HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCEECCHHHHCCCCCCHHHHH
QSIAQRQKQGVLAINH
HHHHHHHHCCCEEECC
>Mature Secondary Structure
MDMDFTSLNNQHSDLNNPVFSRIKAKRIDLENPDLASDGFNKQDFANKVAASVDHNASDL
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCE
HLCTGFHPVLRIDGELKTFTDWPKVTAGWLNGLRRHMLSDAQESRLQQQGQVDCAYTTVG
EEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
SQRLRANIFQQRQGQSIAFRIIPAICPSLTQLAAPPILNQLIQQDNGLILVTGATGSGKS
HHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCH
TTLSAMISAINQQQARHIITLEDPIEFIHSSQSCLIQQRELGRHTHCFSRALNGALRQDP
HHHHHHHHHHHHHHCCEEEEEHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCHHHCCC
DIILLGELRDLETIRLALTAAETGHLVLATLHTRTATQAIDRLIDVFPPEEKAVIRTQLA
CEEEECCCCCHHHHHEEEEECCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ASLRGVITQKLCRQNGGGRIAVFEILTQTTAVSHLIREGKTYQLPTVIQAGGQWGMQTFE
HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCEECCHHHHCCCCCCHHHHH
QSIAQRQKQGVLAINH
HHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]