| Definition | Yersinia pestis KIM 10 chromosome, complete genome. |
|---|---|
| Accession | NC_004088 |
| Length | 4,600,755 |
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The map label for this gene is exeL [H]
Identifier: 22127073
GI number: 22127073
Start: 3516898
End: 3518088
Strand: Reverse
Name: exeL [H]
Synonym: y3197
Alternate gene names: 22127073
Gene position: 3518088-3516898 (Counterclockwise)
Preceding gene: 22127074
Following gene: 22127072
Centisome position: 76.47
GC content: 31.99
Gene sequence:
>1191_bases GTGAGCAACATCATTGATGACGTGAAATTAACCTTCACACTCCTTATTCGACTAGGAGAAACAGAATTTGAACCTATCTA TTGGTATGTTGAATCACAGGGAAAGAAATTAGTCAGACATGGAAAAATTAATGGAGTCGCTGAGTTAAAAAATATAACTT TATATGCTAATAATGTTGTCAAGATTTTGGTCCCCGCAAATAAAATCATTTTCAGAAGCTTAAGTATTAAGAAAAATGAA GTGATGAATAATATAAAATCGATAGCCTTCTCGATTGAACAGTCTATTTCTAGTGATATAGATAATTTTCATATTGTGAT ATTAGATCAAGATAAAGACTTTTGCCATGTTGCTGCTATTGAACATGAATTGATGAATCGTTGGTTGTTCTGGTTAAACA TAAATGGGATATCAGCATGTTGCATAATGCCAGACGCTTTTGCTCTGCCCTTTTTTAACAGTGAATGGAGTGTTATAAAA ATTGAGAGTAACTGGTTGGTTAGAAATAATGAAATGTCTGGTTTTTTAGTTAATTCGAGTGTTTTGGAAAACATACTTAT GTTAGCGGAACCCACCATTAAAGTTAATACTTTTAGTCCGACAGATATTAAATGGGGTAATTGGCAGTCGCTAGACTATA GTGATCCTGTATTAATTATGGCAAAAACTGTGAGTGGTAATCATGTTAATCTATTGAGTGGGAAATATAAATATGCTGAA AGAATAATAGTTAACAATAGTGTTTTTTTGCGTGTTGCCAGTTGGTTTTTTCTCTTGTTTTTAGTAATGAGTTTAAATGG TTGGTATCAAGGTTACAAAATAGTCAGGGATACAGGGGCCTTAAGTAAGGTAGCACAAGATTTTTATGCTGATTTTTTAC CCCCCGCATATCATGGTGGGGATGTTAATACGAGCTTCAATAAATATATTTCAGATCTGGATCTTAAAAAAAACAATGTC AGTTTCATTAAATTATTAAATGCTGTAAGTTATTATACAGCTGATGAAAATGTAGATGTACGTAGTTTTAATTTCAATTA TTCTGATGGTGAAATATCTTTTGATATTGAAGGTGATGATGATTTAATAAATGAAATGCTAAATGATAAAACTAATCTAT TTAATGCCAGGGTTGAGGTGATTCGTTCTGGAGAAGACAAATATAATATCAAACTAAGCAGCCAACCATGA
Upstream 100 bases:
>100_bases ATATTTAGAATTGATCATGAAGATAGTTATTATCAACTGATTACTTTTATCCATGCTGTAGGTAAGTCAATAGCTATTTT AAACCGGAGATACAGTTTTA
Downstream 100 bases:
>100_bases GTTACGTCATGTTTTTACAGCATTTATTTTCTGCAAAGAGAAGAGTGCTACTACTTTATCTGCTTGTTATCTCTATTCCT ATCGTGTATTACATTACCAG
Product: L-like GSP protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 396; Mature: 395
Protein sequence:
>396_residues MSNIIDDVKLTFTLLIRLGETEFEPIYWYVESQGKKLVRHGKINGVAELKNITLYANNVVKILVPANKIIFRSLSIKKNE VMNNIKSIAFSIEQSISSDIDNFHIVILDQDKDFCHVAAIEHELMNRWLFWLNINGISACCIMPDAFALPFFNSEWSVIK IESNWLVRNNEMSGFLVNSSVLENILMLAEPTIKVNTFSPTDIKWGNWQSLDYSDPVLIMAKTVSGNHVNLLSGKYKYAE RIIVNNSVFLRVASWFFLLFLVMSLNGWYQGYKIVRDTGALSKVAQDFYADFLPPAYHGGDVNTSFNKYISDLDLKKNNV SFIKLLNAVSYYTADENVDVRSFNFNYSDGEISFDIEGDDDLINEMLNDKTNLFNARVEVIRSGEDKYNIKLSSQP
Sequences:
>Translated_396_residues MSNIIDDVKLTFTLLIRLGETEFEPIYWYVESQGKKLVRHGKINGVAELKNITLYANNVVKILVPANKIIFRSLSIKKNE VMNNIKSIAFSIEQSISSDIDNFHIVILDQDKDFCHVAAIEHELMNRWLFWLNINGISACCIMPDAFALPFFNSEWSVIK IESNWLVRNNEMSGFLVNSSVLENILMLAEPTIKVNTFSPTDIKWGNWQSLDYSDPVLIMAKTVSGNHVNLLSGKYKYAE RIIVNNSVFLRVASWFFLLFLVMSLNGWYQGYKIVRDTGALSKVAQDFYADFLPPAYHGGDVNTSFNKYISDLDLKKNNV SFIKLLNAVSYYTADENVDVRSFNFNYSDGEISFDIEGDDDLINEMLNDKTNLFNARVEVIRSGEDKYNIKLSSQP >Mature_395_residues SNIIDDVKLTFTLLIRLGETEFEPIYWYVESQGKKLVRHGKINGVAELKNITLYANNVVKILVPANKIIFRSLSIKKNEV MNNIKSIAFSIEQSISSDIDNFHIVILDQDKDFCHVAAIEHELMNRWLFWLNINGISACCIMPDAFALPFFNSEWSVIKI ESNWLVRNNEMSGFLVNSSVLENILMLAEPTIKVNTFSPTDIKWGNWQSLDYSDPVLIMAKTVSGNHVNLLSGKYKYAER IIVNNSVFLRVASWFFLLFLVMSLNGWYQGYKIVRDTGALSKVAQDFYADFLPPAYHGGDVNTSFNKYISDLDLKKNNVS FIKLLNAVSYYTADENVDVRSFNFNYSDGEISFDIEGDDDLINEMLNDKTNLFNARVEVIRSGEDKYNIKLSSQP
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG3297
COG function: function code U; Type II secretory pathway, component PulL
Gene ontology:
Cell location: Cell inner membrane (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP L family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007812 [H]
Pfam domain/function: PF05134 GspL [H]
EC number: NA
Molecular weight: Translated: 45272; Mature: 45141
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNIIDDVKLTFTLLIRLGETEFEPIYWYVESQGKKLVRHGKINGVAELKNITLYANNVV CCCCHHHHHEEEEEEEEECCCCCCEEEEEEECCCHHHHHCCCCCCEEEEEEEEEEECCEE KILVPANKIIFRSLSIKKNEVMNNIKSIAFSIEQSISSDIDNFHIVILDQDKDFCHVAAI EEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEHHHH EHELMNRWLFWLNINGISACCIMPDAFALPFFNSEWSVIKIESNWLVRNNEMSGFLVNSS HHHHHCCEEEEEEECCEEEEEECCCHHCCCEECCCCCEEEEECCEEEECCCCCEEEECHH VLENILMLAEPTIKVNTFSPTDIKWGNWQSLDYSDPVLIMAKTVSGNHVNLLSGKYKYAE HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCHHHEE RIIVNNSVFLRVASWFFLLFLVMSLNGWYQGYKIVRDTGALSKVAQDFYADFLPPAYHGG EEEECCHHHHHHHHHHHHHHHHHHCCCHHCCEEEEECCCHHHHHHHHHHHHCCCCCCCCC DVNTSFNKYISDLDLKKNNVSFIKLLNAVSYYTADENVDVRSFNFNYSDGEISFDIEGDD CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEECCCCCCEEEEEECCCH DLINEMLNDKTNLFNARVEVIRSGEDKYNIKLSSQP HHHHHHHCCHHHHHHHEEHEEECCCCEEEEEECCCC >Mature Secondary Structure SNIIDDVKLTFTLLIRLGETEFEPIYWYVESQGKKLVRHGKINGVAELKNITLYANNVV CCCHHHHHEEEEEEEEECCCCCCEEEEEEECCCHHHHHCCCCCCEEEEEEEEEEECCEE KILVPANKIIFRSLSIKKNEVMNNIKSIAFSIEQSISSDIDNFHIVILDQDKDFCHVAAI EEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEHHHH EHELMNRWLFWLNINGISACCIMPDAFALPFFNSEWSVIKIESNWLVRNNEMSGFLVNSS HHHHHCCEEEEEEECCEEEEEECCCHHCCCEECCCCCEEEEECCEEEECCCCCEEEECHH VLENILMLAEPTIKVNTFSPTDIKWGNWQSLDYSDPVLIMAKTVSGNHVNLLSGKYKYAE HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCHHHEE RIIVNNSVFLRVASWFFLLFLVMSLNGWYQGYKIVRDTGALSKVAQDFYADFLPPAYHGG EEEECCHHHHHHHHHHHHHHHHHHCCCHHCCEEEEECCCHHHHHHHHHHHHCCCCCCCCC DVNTSFNKYISDLDLKKNNVSFIKLLNAVSYYTADENVDVRSFNFNYSDGEISFDIEGDD CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHEEECCCCCEEEEEECCCCCCEEEEEECCCH DLINEMLNDKTNLFNARVEVIRSGEDKYNIKLSSQP HHHHHHHCCHHHHHHHEEHEEECCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8407845 [H]