| Definition | Yersinia pestis KIM 10 chromosome, complete genome. |
|---|---|
| Accession | NC_004088 |
| Length | 4,600,755 |
Click here to switch to the map view.
The map label for this gene is torZ [C]
Identifier: 22127058
GI number: 22127058
Start: 3501793
End: 3503919
Strand: Reverse
Name: torZ [C]
Synonym: y3182
Alternate gene names: 22127058
Gene position: 3503919-3501793 (Counterclockwise)
Preceding gene: 22127060
Following gene: 161484766
Centisome position: 76.16
GC content: 51.81
Gene sequence:
>2127_bases ATGGTTTACTCCGATAAACGTATCCGTAAACCCGCCATCCGCCGTTCTTGGTTAAAGCGGCGGGAGAAGAGTGACCGGAC TCTACGCGGGCAGGAGGATTTTGTTGAAGTCGACTGGGATGTGGCGCTGGATTTAGTGGCCGAAGAGAATCGCCGGGTTA GGGACCAATACGGGCCTGCTGGGTTATTTACCGGCTCTTATGGCTGGTCTTCTGCGGGGCGTTTACATCATGCCCGCTCA TTAGTTCGGCGTTTCTATTTCAGTGGCGGTGGCGGTGTCGATCAATTAGGTAATTACAGTTGGGGGGCTGCACAATTTTT CCTGCCTTATGTCATTGGGACCTTTAGCCCATTGACCGGGCGGGTGACGTCATGGCCCAGTGTGGTGGAACACTGTGAAT TGTTCATTGCTTTTGGTGGGCTGGCACTGAAAAATGCGCAAGTCTCCTCCGGTGGGTCGGCTGAACATTCCCTTAAACTC TGGCTAGAGAAACTGGCACAAAAAGGGACGCCAGTCATTAATATCAGCCCGATGCGTGATGATTGCCCCGCATTTGTTAA CGCGGAATGGATACCCATTCGTCCGAATACAGACGTCGCGCTGATGTTGGCGTTGGCTTATGAAATTCAGCGCCTTGATG GTCATGATGAGGCATTCCTTGCAACCCATTGTGTGGGTTATGGTCAATTGGCTGATTATATTCGTGGGGCCAATGACGGG ATAGCGAAAACTCCAGACTGGGCGAGCAGCATTACCGGTATTCCTGCGGCCAGAATCGCACAGTTAGCGCAACAACTTAT CGGTGTGCGCAGTTTTATGACCTGTTCGTATTCGGTGCAACGTGCGCATCGTGGTGAGCAACCGTATTGGATGGTGATTG CATTATCAGCCATGTTGGGGCAAGTCGGGCTACCGGGTGGGGGTTTTTCATTCGGTCATGGTTCGATGAATGGTGTGGGT AACCCGCGCATTGATACACCGGGGCCAGCCATGCCAGTGGGTAAGAACCCCGCCGGATTGGCTATTCCTGTGGCACGGAT TTGCGACATGTTGTTACAACCGGGGCAACCATATCAATTTCAGGGTGAAACACATACCTACCCGGATATTCATTTGGTGC ACTGGGCGGGTGGGAACCCGTTCCATCATCATCAGCAGTTGAATCGGTTGGTTGAGGGGTGGCAAAAACCGGATACCGTG ATCGTACAGGACATTTGGTGGACGCCCGTAGCAAAAATGGCCGATATCGTCCTGCCAGTCACCAGTTCACTGGAGCGTAA TGATATCGGTGGATCATCCAGGGATCGCTATGTCTTGGCGATGCATCAGGCGATTGCACCACAGCATCAGGCGCGCCACG ATTTTGATATTTTCGCCGACTTGGCTGACCGATTGGGCTACCGTGAAACCTTTACCGAGGGTCGTGATGAAATGGCGTGG ATCAGGCATATTTATCAGGAGTGTGGTGCGGCACAGCGCTCTCATGATGTTGAATGGCCAGATTTTGAGACTTTTTGGCA ACAAGGGTATGTCGGTTTACCTGCTCCCTCCAAAGCATTTGTGTTCTTTGATTCTTTCCGTGAAGACCCACAGGCTAATC CATTACAGACCCCGAGTGGCAAAATTGAATTATTTAGTGAAAAAATTGCCAGCTACCAATACAACGATTTTGCACCTCAT GCAGAGTGGAAACCTCCGGTCGAATGGCTGGGCGCTCCGCTGGCTGAACAGTGGCCGCTACATTTAATCTCTATTCAACC GGGAGATCGCTTACACAGTCAGCTCGATCCCGCCCCATTGGCTCAGAGCAATAAAACCGCAGGTCGTGAAACGCTGTATA TGCATCCGCTGGATGCGGCCAGCCGTGATATTACCGAAGGTAGTCAGGTCCAGGTTAGCAACTTACGCGGTCACTGTCTG GCGGGGGTCAGTATTACTGATGGGGTTACCCGTGGGGTGGTATTGATGGCAACCGGAGCCTGGTTTGATCCTGGTTTTGG GGGCACGCAGCATAAAATTGAACAATCCGGTAACCCAAATGTATTGACGCTGGATATTGGGACATCTCGATTGACTCAAG GCCCAAATGCGATGAGCTGTTTGGTCGAGGTGGCGCTTTATGAGTAG
Upstream 100 bases:
>100_bases GGGCGCTTATACCGCAGTTGTTGAAGATGGCAAGCTGATCCGCTGCGAGCCATTTGCCGATGATCCCGATCCCTCGCCGC TACTGAACTCAATTGTTCCG
Downstream 100 bases:
>100_bases ATTATCTTTCGTTTGCCGCCTTCCTGTAGCTCGAATTATTTAGGGTCTATTCGCCAAACAGCCACTTGGGAATGTATTTC TCTGGTGGCTGAAATGCGAT
Product: reductase
Products: Biotin [C]
Alternate protein names: BDS reductase; BSO reductase [H]
Number of amino acids: Translated: 708; Mature: 708
Protein sequence:
>708_residues MVYSDKRIRKPAIRRSWLKRREKSDRTLRGQEDFVEVDWDVALDLVAEENRRVRDQYGPAGLFTGSYGWSSAGRLHHARS LVRRFYFSGGGGVDQLGNYSWGAAQFFLPYVIGTFSPLTGRVTSWPSVVEHCELFIAFGGLALKNAQVSSGGSAEHSLKL WLEKLAQKGTPVINISPMRDDCPAFVNAEWIPIRPNTDVALMLALAYEIQRLDGHDEAFLATHCVGYGQLADYIRGANDG IAKTPDWASSITGIPAARIAQLAQQLIGVRSFMTCSYSVQRAHRGEQPYWMVIALSAMLGQVGLPGGGFSFGHGSMNGVG NPRIDTPGPAMPVGKNPAGLAIPVARICDMLLQPGQPYQFQGETHTYPDIHLVHWAGGNPFHHHQQLNRLVEGWQKPDTV IVQDIWWTPVAKMADIVLPVTSSLERNDIGGSSRDRYVLAMHQAIAPQHQARHDFDIFADLADRLGYRETFTEGRDEMAW IRHIYQECGAAQRSHDVEWPDFETFWQQGYVGLPAPSKAFVFFDSFREDPQANPLQTPSGKIELFSEKIASYQYNDFAPH AEWKPPVEWLGAPLAEQWPLHLISIQPGDRLHSQLDPAPLAQSNKTAGRETLYMHPLDAASRDITEGSQVQVSNLRGHCL AGVSITDGVTRGVVLMATGAWFDPGFGGTQHKIEQSGNPNVLTLDIGTSRLTQGPNAMSCLVEVALYE
Sequences:
>Translated_708_residues MVYSDKRIRKPAIRRSWLKRREKSDRTLRGQEDFVEVDWDVALDLVAEENRRVRDQYGPAGLFTGSYGWSSAGRLHHARS LVRRFYFSGGGGVDQLGNYSWGAAQFFLPYVIGTFSPLTGRVTSWPSVVEHCELFIAFGGLALKNAQVSSGGSAEHSLKL WLEKLAQKGTPVINISPMRDDCPAFVNAEWIPIRPNTDVALMLALAYEIQRLDGHDEAFLATHCVGYGQLADYIRGANDG IAKTPDWASSITGIPAARIAQLAQQLIGVRSFMTCSYSVQRAHRGEQPYWMVIALSAMLGQVGLPGGGFSFGHGSMNGVG NPRIDTPGPAMPVGKNPAGLAIPVARICDMLLQPGQPYQFQGETHTYPDIHLVHWAGGNPFHHHQQLNRLVEGWQKPDTV IVQDIWWTPVAKMADIVLPVTSSLERNDIGGSSRDRYVLAMHQAIAPQHQARHDFDIFADLADRLGYRETFTEGRDEMAW IRHIYQECGAAQRSHDVEWPDFETFWQQGYVGLPAPSKAFVFFDSFREDPQANPLQTPSGKIELFSEKIASYQYNDFAPH AEWKPPVEWLGAPLAEQWPLHLISIQPGDRLHSQLDPAPLAQSNKTAGRETLYMHPLDAASRDITEGSQVQVSNLRGHCL AGVSITDGVTRGVVLMATGAWFDPGFGGTQHKIEQSGNPNVLTLDIGTSRLTQGPNAMSCLVEVALYE >Mature_708_residues MVYSDKRIRKPAIRRSWLKRREKSDRTLRGQEDFVEVDWDVALDLVAEENRRVRDQYGPAGLFTGSYGWSSAGRLHHARS LVRRFYFSGGGGVDQLGNYSWGAAQFFLPYVIGTFSPLTGRVTSWPSVVEHCELFIAFGGLALKNAQVSSGGSAEHSLKL WLEKLAQKGTPVINISPMRDDCPAFVNAEWIPIRPNTDVALMLALAYEIQRLDGHDEAFLATHCVGYGQLADYIRGANDG IAKTPDWASSITGIPAARIAQLAQQLIGVRSFMTCSYSVQRAHRGEQPYWMVIALSAMLGQVGLPGGGFSFGHGSMNGVG NPRIDTPGPAMPVGKNPAGLAIPVARICDMLLQPGQPYQFQGETHTYPDIHLVHWAGGNPFHHHQQLNRLVEGWQKPDTV IVQDIWWTPVAKMADIVLPVTSSLERNDIGGSSRDRYVLAMHQAIAPQHQARHDFDIFADLADRLGYRETFTEGRDEMAW IRHIYQECGAAQRSHDVEWPDFETFWQQGYVGLPAPSKAFVFFDSFREDPQANPLQTPSGKIELFSEKIASYQYNDFAPH AEWKPPVEWLGAPLAEQWPLHLISIQPGDRLHSQLDPAPLAQSNKTAGRETLYMHPLDAASRDITEGSQVQVSNLRGHCL AGVSITDGVTRGVVLMATGAWFDPGFGGTQHKIEQSGNPNVLTLDIGTSRLTQGPNAMSCLVEVALYE
Specific function: This enzyme may serve as a scavenger, allowing the cell to utilize biotin sulfoxide as a biotin source. It reduces a spontaneous oxidation product of biotin, D-biotin D-sulfoxide (BSO or BDS), back to biotin [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Periplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI87081994, Length=725, Percent_Identity=39.5862068965517, Blast_Score=534, Evalue=1e-153, Organism=Escherichia coli, GI145693196, Length=719, Percent_Identity=40.7510431154381, Blast_Score=521, Evalue=1e-149, Organism=Escherichia coli, GI1787231, Length=730, Percent_Identity=39.5890410958904, Blast_Score=489, Evalue=1e-139, Organism=Escherichia coli, GI87081797, Length=713, Percent_Identity=30.8555399719495, Blast_Score=285, Evalue=5e-78, Organism=Escherichia coli, GI1787870, Length=748, Percent_Identity=28.2085561497326, Blast_Score=250, Evalue=3e-67, Organism=Escherichia coli, GI171474008, Length=746, Percent_Identity=28.1501340482574, Blast_Score=246, Evalue=5e-66, Organism=Escherichia coli, GI3868721, Length=718, Percent_Identity=20.4735376044568, Blast_Score=100, Evalue=5e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006658 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006655 [H]
Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.7.2.3 [C]
Molecular weight: Translated: 78371; Mature: 78371
Theoretical pI: Translated: 6.48; Mature: 6.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVYSDKRIRKPAIRRSWLKRREKSDRTLRGQEDFVEVDWDVALDLVAEENRRVRDQYGPA CCCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHCCHHHHHHCCCC GLFTGSYGWSSAGRLHHARSLVRRFYFSGGGGVDQLGNYSWGAAQFFLPYVIGTFSPLTG CEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCC RVTSWPSVVEHCELFIAFGGLALKNAQVSSGGSAEHSLKLWLEKLAQKGTPVINISPMRD CCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC DCPAFVNAEWIPIRPNTDVALMLALAYEIQRLDGHDEAFLATHCVGYGQLADYIRGANDG CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCC IAKTPDWASSITGIPAARIAQLAQQLIGVRSFMTCSYSVQRAHRGEQPYWMVIALSAMLG CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHH QVGLPGGGFSFGHGSMNGVGNPRIDTPGPAMPVGKNPAGLAIPVARICDMLLQPGQPYQF HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCEEE QGETHTYPDIHLVHWAGGNPFHHHQQLNRLVEGWQKPDTVIVQDIWWTPVAKMADIVLPV CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH TSSLERNDIGGSSRDRYVLAMHQAIAPQHQARHDFDIFADLADRLGYRETFTEGRDEMAW HCCCCCCCCCCCCCCCEEEEHHHHHCCHHHCCCCHHHHHHHHHHCCCHHHHHCCHHHHHH IRHIYQECGAAQRSHDVEWPDFETFWQQGYVGLPAPSKAFVFFDSFREDPQANPLQTPSG HHHHHHHHCCHHHCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC KIELFSEKIASYQYNDFAPHAEWKPPVEWLGAPLAEQWPLHLISIQPGDRLHSQLDPAPL CHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEECCCHHHHHHCCCCCC AQSNKTAGRETLYMHPLDAASRDITEGSQVQVSNLRGHCLAGVSITDGVTRGVVLMATGA CCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCEECCCCCCCEEEEEECC WFDPGFGGTQHKIEQSGNPNVLTLDIGTSRLTQGPNAMSCLVEVALYE CCCCCCCCCHHHHHCCCCCCEEEEECCHHHHCCCCCHHHHHHHHHHCC >Mature Secondary Structure MVYSDKRIRKPAIRRSWLKRREKSDRTLRGQEDFVEVDWDVALDLVAEENRRVRDQYGPA CCCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHCCHHHHHHCCCC GLFTGSYGWSSAGRLHHARSLVRRFYFSGGGGVDQLGNYSWGAAQFFLPYVIGTFSPLTG CEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCC RVTSWPSVVEHCELFIAFGGLALKNAQVSSGGSAEHSLKLWLEKLAQKGTPVINISPMRD CCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC DCPAFVNAEWIPIRPNTDVALMLALAYEIQRLDGHDEAFLATHCVGYGQLADYIRGANDG CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCCCC IAKTPDWASSITGIPAARIAQLAQQLIGVRSFMTCSYSVQRAHRGEQPYWMVIALSAMLG CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHH QVGLPGGGFSFGHGSMNGVGNPRIDTPGPAMPVGKNPAGLAIPVARICDMLLQPGQPYQF HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCEEE QGETHTYPDIHLVHWAGGNPFHHHQQLNRLVEGWQKPDTVIVQDIWWTPVAKMADIVLPV CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH TSSLERNDIGGSSRDRYVLAMHQAIAPQHQARHDFDIFADLADRLGYRETFTEGRDEMAW HCCCCCCCCCCCCCCCEEEEHHHHHCCHHHCCCCHHHHHHHHHHCCCHHHHHCCHHHHHH IRHIYQECGAAQRSHDVEWPDFETFWQQGYVGLPAPSKAFVFFDSFREDPQANPLQTPSG HHHHHHHHCCHHHCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC KIELFSEKIASYQYNDFAPHAEWKPPVEWLGAPLAEQWPLHLISIQPGDRLHSQLDPAPL CHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEECCCHHHHHHCCCCCC AQSNKTAGRETLYMHPLDAASRDITEGSQVQVSNLRGHCLAGVSITDGVTRGVVLMATGA CCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCEECCCCCCCEEEEEECC WFDPGFGGTQHKIEQSGNPNVLTLDIGTSRLTQGPNAMSCLVEVALYE CCCCCCCCCHHHHHCCCCCCEEEEECCHHHHCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: A Spontaneous Oxidation Product Of Biotin, D-Biotin D-Sulfoxide (Bso Or Bds) [C]
Specific reaction: Reduces A Spontaneous Oxidation Product Of Biotin, D-Biotin D-Sulfoxide (Bso Or Bds), Back To Biotin. [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7733660 [H]