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The map label for this gene is ygdD [H]

Identifier: 22127029

GI number: 22127029

Start: 3465351

End: 3465770

Strand: Reverse

Name: ygdD [H]

Synonym: y3153

Alternate gene names: 22127029

Gene position: 3465770-3465351 (Counterclockwise)

Preceding gene: 22127030

Following gene: 22127028

Centisome position: 75.33

GC content: 47.14

Gene sequence:

>420_bases
TTGTCTAATTTAAGGTTAGTAACGATGAACAGTCGTTTAATGCTGATATTTTCCGCTCTGAGCGGTTTTTTCTATGTTGC
TTTCGGTGCCTTCGGGGCTCATGTATTAAGCACCTCTCTGGGGCTGAATGAAATGGCCTGGATTCGTACCGGGCTGGAGT
ATCAGGGGTTCCATACGTTGGTTATTCTGATATTAGCTGTTGCGATGCAACGGCAGGTCAGTCTTTGGTTTTACTGGAGT
GGGGCCTTGTTAGCGCTCGGAACGCTACTCTTTAGCGGCAGTTTATACTGTCTGGCTCTATCACACCTGAGACTGTGGAT
ATATATCACGCCAGTAGGCGGAGTCTGTTTTCTGGCGGGATGGATTTTGATGTTGATTGGCGCACTGCGTCTAAGAAAAA
GGGCAGAACGCCATGAATAA

Upstream 100 bases:

>100_bases
CTGCACTTGATTGGTTACAGTATCTGCGCAGTAATGACAACCCATTCATGATGGTAACCTGCCACGAATAGGGCGATTAC
CGGGCGATATAACGATAACT

Downstream 100 bases:

>100_bases
TAAAATTGCTTTATATTGCCGCTCCGGCTTTGAGAAAGAGTGTGCGGCAGAAATAACAGAGAAGGCTGCACAGCTCGAAA
TCTTTGGTTTTGCACGGGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MSNLRLVTMNSRLMLIFSALSGFFYVAFGAFGAHVLSTSLGLNEMAWIRTGLEYQGFHTLVILILAVAMQRQVSLWFYWS
GALLALGTLLFSGSLYCLALSHLRLWIYITPVGGVCFLAGWILMLIGALRLRKRAERHE

Sequences:

>Translated_139_residues
MSNLRLVTMNSRLMLIFSALSGFFYVAFGAFGAHVLSTSLGLNEMAWIRTGLEYQGFHTLVILILAVAMQRQVSLWFYWS
GALLALGTLLFSGSLYCLALSHLRLWIYITPVGGVCFLAGWILMLIGALRLRKRAERHE
>Mature_138_residues
SNLRLVTMNSRLMLIFSALSGFFYVAFGAFGAHVLSTSLGLNEMAWIRTGLEYQGFHTLVILILAVAMQRQVSLWFYWSG
ALLALGTLLFSGSLYCLALSHLRLWIYITPVGGVCFLAGWILMLIGALRLRKRAERHE

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=131, Percent_Identity=71.7557251908397, Blast_Score=197, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 15603; Mature: 15472

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLRLVTMNSRLMLIFSALSGFFYVAFGAFGAHVLSTSLGLNEMAWIRTGLEYQGFHTL
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHH
VILILAVAMQRQVSLWFYWSGALLALGTLLFSGSLYCLALSHLRLWIYITPVGGVCFLAG
HHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHEEEEEEECCCHHHHHHH
WILMLIGALRLRKRAERHE
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNLRLVTMNSRLMLIFSALSGFFYVAFGAFGAHVLSTSLGLNEMAWIRTGLEYQGFHTL
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHH
VILILAVAMQRQVSLWFYWSGALLALGTLLFSGSLYCLALSHLRLWIYITPVGGVCFLAG
HHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHEEEEEEECCCHHHHHHH
WILMLIGALRLRKRAERHE
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]