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The map label for this gene is ybjD [H]

Identifier: 22126694

GI number: 22126694

Start: 3119962

End: 3121653

Strand: Reverse

Name: ybjD [H]

Synonym: y2817

Alternate gene names: 22126694

Gene position: 3121653-3119962 (Counterclockwise)

Preceding gene: 22126704

Following gene: 22126691

Centisome position: 67.85

GC content: 50.59

Gene sequence:

>1692_bases
ATGAGTTCTCATCGGAGGCGTAGCATGTATCTTGAACGCGTAGAAATTGTCGGTTTTCGTGGTATTAATCGTATTTCATT
GAACCTTGACGATAATACGTTGCTGATCGGTGAGAACGCTTGGGGTAAATCCAGTTTATTAGATGCGCTGACACTGCTTT
TATCGCCAGAACCCCAACTTTATCATTTCACTGTGCAGGATTTTTATTATCCAACAGGGGATGAAAGCGCTAAAGAGCGT
CATCTACAGGTTATTTTGACTTTTTGTGAAAAAGATATTGGTCATTGGCATGCTCCACGTTACCGCCAGCTAGCCCCACT
GTGGATAAAAAATAACGATGGGTTACATCGTATCTACTATCGAGTGGAAGGAGAGCTGGGTGATGATGGGACGGTATGCA
CGTGGCGTACTTTTCTGAATTTAGACGGGCAACCTCTGCCGTTGCACGATATCGAAAAACTGGCGCGGGGAGTGATCCGT
ATTCACCCGGTACTACGATTACGGGATGCGCGTTTTATACGCCGTTTGCGCCGTACCGTTTCCGAAGACAGTAAAGCGCC
AGATAAGGTTGCATTGAATCGGCAGTTAGATCAGTTGAGCCGCGAGTTGGTACGGAATCCGCAAAAACTGACCAATGCAG
AGTTGCGCCAAGGGGTGGAGGCGATGCGCCAACTGCTTGAGCATTATTTTGCTGAGCAAGGTTCTCAATTGCCGGGTCAT
CACAATAATCCCCCTCGTCCGCAACCGGAACGTGCGGCGTGGCAAGCACTAGACAATATCAACCGCATGGCGGCAGAACC
TAACAGCCGCAGTATGAGGCTAATTTTGTTGGGGATGTTTTCAACGTTATTGCAAGCAAAAGGCTCACTGAGCCTCGATC
CTCATGCCCGGCCATTGCTCTTGGTCGAAGACCCGGAAACGCGGTTACACCCGATTATGCTCTCCGTCGCTTGGGGGTTG
CTCAGCCAATTACCGCTACAGCGTATCACCACCACTAACTCCGGCGAATTAGTGTCATTAGTGCCACTGGAAAGCATTTG
TCGCTTGGTACGTGAATCTTCCAGAGTGGCCACTTACCGTATTGGCCCAAGAGGCATGAGCCCTGAAGACAGCCGTCGAA
TTGCTTTTCACATTCGCTTCAACCGGCCCTCCGCCTTATTTGCCCGTTGCTGGCTGCTGGTGGAAGGCGAAACAGAAATT
TGGCTGCTGAACGAATTAGCCCGCCAGTGCGGTTATCACTTTGAGGCTGAAGGGGTAAAAGTGATCGAGTTTGCTCAAAG
TGGTTTGCGCCCGTTGCTGAAATTTGCCAACCGGATGGGGATCCAGTGGCATACCTTGACCGATGGTGATGACGCAGGTA
AAAAATACGCCGCCACGGTACGCAATATGGCCGATCAGGGGCGCGATAGTGAGCGGGATCGCCTAACAATTTTGCCTGCA
CCCGATATGGAGCATTTTTTATACCGCGCAGGTTTTGATGAAGTGTATCACCGTGTTTCGGCGATCCCCGCGAATGCGAA
AATGCAGCCACGCAGGGTCATTGATAAAGCCATACACCGTACTTCCAAACCCGATTTAGCCATTGAAGTGGCCAGCCAAG
CAGGGCAATGGGGGGTAGAATCAATCCCCCCACTGTTGAAAAAGATGTTCTCTCGCGTGGTCTGGTTGGCCCGAGGCCGG
GCTGATGAATAG

Upstream 100 bases:

>100_bases
CTTGACTAAGACTTGACCTATAAGGTTTTTTTACGCTTTTCTCGCAGAATGAACCGCTATTATTATTGGGTTAACAATGT
TATCTCTAGTATTCGTCTGA

Downstream 100 bases:

>100_bases
AGAGGCTACCATACCTGTCATACTTCAAGCCGCAGGTGGGGTGACTGAGTTTGTGACTCGGCCTGTCCATGGGCCTCGCC
TCTGCGGGGCCGCCGCAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 562

Protein sequence:

>563_residues
MSSHRRRSMYLERVEIVGFRGINRISLNLDDNTLLIGENAWGKSSLLDALTLLLSPEPQLYHFTVQDFYYPTGDESAKER
HLQVILTFCEKDIGHWHAPRYRQLAPLWIKNNDGLHRIYYRVEGELGDDGTVCTWRTFLNLDGQPLPLHDIEKLARGVIR
IHPVLRLRDARFIRRLRRTVSEDSKAPDKVALNRQLDQLSRELVRNPQKLTNAELRQGVEAMRQLLEHYFAEQGSQLPGH
HNNPPRPQPERAAWQALDNINRMAAEPNSRSMRLILLGMFSTLLQAKGSLSLDPHARPLLLVEDPETRLHPIMLSVAWGL
LSQLPLQRITTTNSGELVSLVPLESICRLVRESSRVATYRIGPRGMSPEDSRRIAFHIRFNRPSALFARCWLLVEGETEI
WLLNELARQCGYHFEAEGVKVIEFAQSGLRPLLKFANRMGIQWHTLTDGDDAGKKYAATVRNMADQGRDSERDRLTILPA
PDMEHFLYRAGFDEVYHRVSAIPANAKMQPRRVIDKAIHRTSKPDLAIEVASQAGQWGVESIPPLLKKMFSRVVWLARGR
ADE

Sequences:

>Translated_563_residues
MSSHRRRSMYLERVEIVGFRGINRISLNLDDNTLLIGENAWGKSSLLDALTLLLSPEPQLYHFTVQDFYYPTGDESAKER
HLQVILTFCEKDIGHWHAPRYRQLAPLWIKNNDGLHRIYYRVEGELGDDGTVCTWRTFLNLDGQPLPLHDIEKLARGVIR
IHPVLRLRDARFIRRLRRTVSEDSKAPDKVALNRQLDQLSRELVRNPQKLTNAELRQGVEAMRQLLEHYFAEQGSQLPGH
HNNPPRPQPERAAWQALDNINRMAAEPNSRSMRLILLGMFSTLLQAKGSLSLDPHARPLLLVEDPETRLHPIMLSVAWGL
LSQLPLQRITTTNSGELVSLVPLESICRLVRESSRVATYRIGPRGMSPEDSRRIAFHIRFNRPSALFARCWLLVEGETEI
WLLNELARQCGYHFEAEGVKVIEFAQSGLRPLLKFANRMGIQWHTLTDGDDAGKKYAATVRNMADQGRDSERDRLTILPA
PDMEHFLYRAGFDEVYHRVSAIPANAKMQPRRVIDKAIHRTSKPDLAIEVASQAGQWGVESIPPLLKKMFSRVVWLARGR
ADE
>Mature_562_residues
SSHRRRSMYLERVEIVGFRGINRISLNLDDNTLLIGENAWGKSSLLDALTLLLSPEPQLYHFTVQDFYYPTGDESAKERH
LQVILTFCEKDIGHWHAPRYRQLAPLWIKNNDGLHRIYYRVEGELGDDGTVCTWRTFLNLDGQPLPLHDIEKLARGVIRI
HPVLRLRDARFIRRLRRTVSEDSKAPDKVALNRQLDQLSRELVRNPQKLTNAELRQGVEAMRQLLEHYFAEQGSQLPGHH
NNPPRPQPERAAWQALDNINRMAAEPNSRSMRLILLGMFSTLLQAKGSLSLDPHARPLLLVEDPETRLHPIMLSVAWGLL
SQLPLQRITTTNSGELVSLVPLESICRLVRESSRVATYRIGPRGMSPEDSRRIAFHIRFNRPSALFARCWLLVEGETEIW
LLNELARQCGYHFEAEGVKVIEFAQSGLRPLLKFANRMGIQWHTLTDGDDAGKKYAATVRNMADQGRDSERDRLTILPAP
DMEHFLYRAGFDEVYHRVSAIPANAKMQPRRVIDKAIHRTSKPDLAIEVASQAGQWGVESIPPLLKKMFSRVVWLARGRA
DE

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787102, Length=554, Percent_Identity=64.4404332129964, Blast_Score=703, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022602 [H]

Pfam domain/function: PF11398 DUF2813 [H]

EC number: NA

Molecular weight: Translated: 64487; Mature: 64356

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSHRRRSMYLERVEIVGFRGINRISLNLDDNTLLIGENAWGKSSLLDALTLLLSPEPQL
CCCCHHHHHHHHHHHHEEECCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCE
YHFTVQDFYYPTGDESAKERHLQVILTFCEKDIGHWHAPRYRQLAPLWIKNNDGLHRIYY
EEEEHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEE
RVEGELGDDGTVCTWRTFLNLDGQPLPLHDIEKLARGVIRIHPVLRLRDARFIRRLRRTV
EEECCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEDSKAPDKVALNRQLDQLSRELVRNPQKLTNAELRQGVEAMRQLLEHYFAEQGSQLPGH
HCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
HNNPPRPQPERAAWQALDNINRMAAEPNSRSMRLILLGMFSTLLQAKGSLSLDPHARPLL
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
LVEDPETRLHPIMLSVAWGLLSQLPLQRITTTNSGELVSLVPLESICRLVRESSRVATYR
EEECCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCHHHHHHHHHCCCCEEEEE
IGPRGMSPEDSRRIAFHIRFNRPSALFARCWLLVEGETEIWLLNELARQCGYHFEAEGVK
ECCCCCCCCCCCEEEEEEEECCCHHHHHEEEEEEECCCCEEHHHHHHHHCCCEECCCCCH
VIEFAQSGLRPLLKFANRMGIQWHTLTDGDDAGKKYAATVRNMADQGRDSERDRLTILPA
HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECC
PDMEHFLYRAGFDEVYHRVSAIPANAKMQPRRVIDKAIHRTSKPDLAIEVASQAGQWGVE
CCHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHCCCCCHH
SIPPLLKKMFSRVVWLARGRADE
HHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SSHRRRSMYLERVEIVGFRGINRISLNLDDNTLLIGENAWGKSSLLDALTLLLSPEPQL
CCCHHHHHHHHHHHHEEECCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCE
YHFTVQDFYYPTGDESAKERHLQVILTFCEKDIGHWHAPRYRQLAPLWIKNNDGLHRIYY
EEEEHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEE
RVEGELGDDGTVCTWRTFLNLDGQPLPLHDIEKLARGVIRIHPVLRLRDARFIRRLRRTV
EEECCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEDSKAPDKVALNRQLDQLSRELVRNPQKLTNAELRQGVEAMRQLLEHYFAEQGSQLPGH
HCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
HNNPPRPQPERAAWQALDNINRMAAEPNSRSMRLILLGMFSTLLQAKGSLSLDPHARPLL
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
LVEDPETRLHPIMLSVAWGLLSQLPLQRITTTNSGELVSLVPLESICRLVRESSRVATYR
EEECCCCHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCHHHHHHHHHCCCCEEEEE
IGPRGMSPEDSRRIAFHIRFNRPSALFARCWLLVEGETEIWLLNELARQCGYHFEAEGVK
ECCCCCCCCCCCEEEEEEEECCCHHHHHEEEEEEECCCCEEHHHHHHHHCCCEECCCCCH
VIEFAQSGLRPLLKFANRMGIQWHTLTDGDDAGKKYAATVRNMADQGRDSERDRLTILPA
HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECC
PDMEHFLYRAGFDEVYHRVSAIPANAKMQPRRVIDKAIHRTSKPDLAIEVASQAGQWGVE
CCHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHCCCCCHH
SIPPLLKKMFSRVVWLARGRADE
HHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]