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The map label for this gene is cspE [H]

Identifier: 22126652

GI number: 22126652

Start: 3065525

End: 3065758

Strand: Reverse

Name: cspE [H]

Synonym: y2774

Alternate gene names: 22126652

Gene position: 3065758-3065525 (Counterclockwise)

Preceding gene: 22126654

Following gene: 22126650

Centisome position: 66.64

GC content: 44.02

Gene sequence:

>234_bases
ATGCCCAGTAAAAGGAAATTTATTATGACGTTAAAAATGGGGCGCGTGAAGTGGTTCAACCAGTCGGAAGGCTACGGTTT
CATTTCACCACACGATGGTGGTTCGGATGTTTATGTCAACAAAACGGCCATTGCCAACACCAAAAACAAATCACTGAATG
AAGGGCAGGACGTTGAGTTTTCTACATATCGTAGTATTCACGGACCGTCAGCAGCAGATGTGATCGCTTTCTAA

Upstream 100 bases:

>100_bases
TTATGCGGTTTTTTCATAAAATCAAGCTCATAGAGGTTTAGTCAAAAAACTTTAGGATGGGCAACTGCATCTAAACAATA
AATAATAATGAGTTGTTAGG

Downstream 100 bases:

>100_bases
GCAAACGGCTACCTCATCGGTAGCCGTTTCTCCCTTCTCGTCAGCGCCATAACGTCGTTAGCGGCTCTTACTCACCTGAA
TCACTGACGGATGTGACCTC

Product: cold shock-like protein

Products: NA

Alternate protein names: CSP-E [H]

Number of amino acids: Translated: 77; Mature: 76

Protein sequence:

>77_residues
MPSKRKFIMTLKMGRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRSIHGPSAADVIAF

Sequences:

>Translated_77_residues
MPSKRKFIMTLKMGRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRSIHGPSAADVIAF
>Mature_76_residues
PSKRKFIMTLKMGRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRSIHGPSAADVIAF

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=52.1739130434783, Blast_Score=74, Evalue=1e-15,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=50, Blast_Score=72, Evalue=6e-15,
Organism=Escherichia coli, GI1788126, Length=63, Percent_Identity=50.7936507936508, Blast_Score=69, Evalue=5e-14,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=52.9411764705882, Blast_Score=69, Evalue=7e-14,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=48.5714285714286, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=47.1428571428571, Blast_Score=66, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 8573; Mature: 8442

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSKRKFIMTLKMGRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDVEF
CCCCCEEEEEEECCEEEEECCCCCEEEECCCCCCCEEEEECEEECCCCCCCCCCCCCCEE
STYRSIHGPSAADVIAF
EEEECCCCCCCCEEEEC
>Mature Secondary Structure 
PSKRKFIMTLKMGRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDVEF
CCCCEEEEEEECCEEEEECCCCCEEEECCCCCCCEEEEECEEECCCCCCCCCCCCCCEE
STYRSIHGPSAADVIAF
EEEECCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]