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The map label for this gene is ompF [H]

Identifier: 22126637

GI number: 22126637

Start: 3047455

End: 3048585

Strand: Direct

Name: ompF [H]

Synonym: y2759

Alternate gene names: 22126637

Gene position: 3047455-3048585 (Clockwise)

Preceding gene: 22126636

Following gene: 161484776

Centisome position: 66.24

GC content: 46.15

Gene sequence:

>1131_bases
TTGGCGGCAGTGGCAGGTGTCCGAATAACACCAATGAGGGTAATAATAATGATGAAGCGCAATATTCTTGCAGTAGTAAT
CCCAGCTCTGTTAGCCGCTGGTGCAGCTAATGCAGCAGAAATCTATAACAAAGATGGCAACAAACTTGACCTGTACGGTA
AAGTTGACGCACGTCACTCTTTCTCCGATAACAACAAACAAGATGGCGACAAGTCTTACGTTCGTTTCGGCTTCAAAGGT
GAAACCCAAATTACTGACCAACTGACCGGTTACGGCCAGTGGGAATACAACATTCAAGCAAACAACGCTGAAGACACAGG
CGCTCAAGACGGCAACGCAACCCGTCTGGGCTTTGCTGGTCTGAAATTTGCTGAATTCGGTTCATTCGACTACGGCCGTA
ACTACGGCGTAATCTATGACGTTAACGCATGGACTGACATGCTGCCAGTGTTCGGTGGTGATTCAATCTCCAACTCTGAC
AACTTCATGGCTGGCCGTTCTACTGGCCTGGCAACTTACCGTAACAACAATTTCTTCGGTCTGGTTGACGGCCTGAACTT
TGCCCTGCAATACCAAGGCAAAAATGACCGTTCTGAAGTCAAAGAAGCTAACGGTGACGGCTTCGGTATCGGTTCTACTT
ATGATATCGGCAATGGCATTAACTTCGGTGCTGGTTTCTCTTCTTCAAACCGTACTCTTGATCAAAAATATGGTTCTACC
GCTGAAGGCGACAAAGCTCAGGCATGGAACGTTGGCGCTAAATACGACGCAAACAACGTATACCTGGCTGTAATGTATGC
TGAAACTCAGAACCTGACTCCATACGGTAGCTTCTCTGATACTATCGCTAACAAGACTCGCGATATCGAGATCACTGCAC
AATATCAGTTCGACTTCGGTCTGCGCCCATCACTGGGTTATGTTCAGTCCAAAGGTAAGGACCTGAACGATGTTGATGCC
AACCATGATCTGCTGAAATATGTTTCTGTTGGTACTTACTACTACTTCAACAAAAACATGTCTACCTATGTTGATTACAA
AATCAACTTGCTGGACGAAGACGAGTTCACAATCGCAAACGGTCTGAACACCGACAACGTTGTTGCTGTTGGCTTGGTTT
ACCAGTTCTAA

Upstream 100 bases:

>100_bases
ATTGGTAGCATTTTCGGTCTGGATTATAAGGTCTGTGAATGGAACACTGCGTTCAGACACAGACGACACCAAACTCTCAA
CAATAGTTCCATAAAAATTA

Downstream 100 bases:

>100_bases
GTCAAACTTAACGAGGCAGTTTATCTGCTGACCTAAGTTGAAAAAAGACAGGGCCTCGGCTCTGTCTTTTTGTTTCTATT
TTGAGCAGATTGATGGAGAT

Product: outer membrane porin

Products: NA

Alternate protein names: Porin ompF [H]

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MAAVAGVRITPMRVIIMMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHSFSDNNKQDGDKSYVRFGFKG
ETQITDQLTGYGQWEYNIQANNAEDTGAQDGNATRLGFAGLKFAEFGSFDYGRNYGVIYDVNAWTDMLPVFGGDSISNSD
NFMAGRSTGLATYRNNNFFGLVDGLNFALQYQGKNDRSEVKEANGDGFGIGSTYDIGNGINFGAGFSSSNRTLDQKYGST
AEGDKAQAWNVGAKYDANNVYLAVMYAETQNLTPYGSFSDTIANKTRDIEITAQYQFDFGLRPSLGYVQSKGKDLNDVDA
NHDLLKYVSVGTYYYFNKNMSTYVDYKINLLDEDEFTIANGLNTDNVVAVGLVYQF

Sequences:

>Translated_376_residues
MAAVAGVRITPMRVIIMMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHSFSDNNKQDGDKSYVRFGFKG
ETQITDQLTGYGQWEYNIQANNAEDTGAQDGNATRLGFAGLKFAEFGSFDYGRNYGVIYDVNAWTDMLPVFGGDSISNSD
NFMAGRSTGLATYRNNNFFGLVDGLNFALQYQGKNDRSEVKEANGDGFGIGSTYDIGNGINFGAGFSSSNRTLDQKYGST
AEGDKAQAWNVGAKYDANNVYLAVMYAETQNLTPYGSFSDTIANKTRDIEITAQYQFDFGLRPSLGYVQSKGKDLNDVDA
NHDLLKYVSVGTYYYFNKNMSTYVDYKINLLDEDEFTIANGLNTDNVVAVGLVYQF
>Mature_375_residues
AAVAGVRITPMRVIIMMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHSFSDNNKQDGDKSYVRFGFKGE
TQITDQLTGYGQWEYNIQANNAEDTGAQDGNATRLGFAGLKFAEFGSFDYGRNYGVIYDVNAWTDMLPVFGGDSISNSDN
FMAGRSTGLATYRNNNFFGLVDGLNFALQYQGKNDRSEVKEANGDGFGIGSTYDIGNGINFGAGFSSSNRTLDQKYGSTA
EGDKAQAWNVGAKYDANNVYLAVMYAETQNLTPYGSFSDTIANKTRDIEITAQYQFDFGLRPSLGYVQSKGKDLNDVDAN
HDLLKYVSVGTYYYFNKNMSTYVDYKINLLDEDEFTIANGLNTDNVVAVGLVYQF

Specific function: OmpF is a porin that forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane. It is also a receptor for the bacteriophage T2 [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=357, Percent_Identity=62.1848739495798, Blast_Score=445, Evalue=1e-126,
Organism=Escherichia coli, GI1788544, Length=374, Percent_Identity=59.8930481283422, Blast_Score=417, Evalue=1e-118,
Organism=Escherichia coli, GI1786436, Length=361, Percent_Identity=57.8947368421053, Blast_Score=412, Evalue=1e-116,
Organism=Escherichia coli, GI1787160, Length=368, Percent_Identity=57.8804347826087, Blast_Score=398, Evalue=1e-112,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41292; Mature: 41161

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAVAGVRITPMRVIIMMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHS
CCCCCCEEECCEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEEECCCCC
FSDNNKQDGDKSYVRFGFKGETQITDQLTGYGQWEYNIQANNAEDTGAQDGNATRLGFAG
CCCCCCCCCCCEEEEEECCCCCEEHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEECC
LKFAEFGSFDYGRNYGVIYDVNAWTDMLPVFGGDSISNSDNFMAGRSTGLATYRNNNFFG
CCHHHCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCCCCCEEECCCCCEEEEECCCEEE
LVDGLNFALQYQGKNDRSEVKEANGDGFGIGSTYDIGNGINFGAGFSSSNRTLDQKYGST
EEECCEEEEEECCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHCCCC
AEGDKAQAWNVGAKYDANNVYLAVMYAETQNLTPYGSFSDTIANKTRDIEITAQYQFDFG
CCCCCCEEECCCCEECCCCEEEEEEEEECCCCCCCCCCHHHHCCCCEEEEEEEEEEECCC
LRPSLGYVQSKGKDLNDVDANHDLLKYVSVGTYYYFNKNMSTYVDYKINLLDEDEFTIAN
CCCCCCHHHHCCCCCCCCCCCCHHHHHEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEC
GLNTDNVVAVGLVYQF
CCCCCCEEEEEEEEEC
>Mature Secondary Structure 
AAVAGVRITPMRVIIMMKRNILAVVIPALLAAGAANAAEIYNKDGNKLDLYGKVDARHS
CCCCCEEECCEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEEECCCCC
FSDNNKQDGDKSYVRFGFKGETQITDQLTGYGQWEYNIQANNAEDTGAQDGNATRLGFAG
CCCCCCCCCCCEEEEEECCCCCEEHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEEECC
LKFAEFGSFDYGRNYGVIYDVNAWTDMLPVFGGDSISNSDNFMAGRSTGLATYRNNNFFG
CCHHHCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCCCCCEEECCCCCEEEEECCCEEE
LVDGLNFALQYQGKNDRSEVKEANGDGFGIGSTYDIGNGINFGAGFSSSNRTLDQKYGST
EEECCEEEEEECCCCCHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHCCCC
AEGDKAQAWNVGAKYDANNVYLAVMYAETQNLTPYGSFSDTIANKTRDIEITAQYQFDFG
CCCCCCEEECCCCEECCCCEEEEEEEEECCCCCCCCCCHHHHCCCCEEEEEEEEEEECCC
LRPSLGYVQSKGKDLNDVDANHDLLKYVSVGTYYYFNKNMSTYVDYKINLLDEDEFTIAN
CCCCCCHHHHCCCCCCCCCCCCHHHHHEEEEEEEEECCCCCEEEEEEEEEECCCCEEEEC
GLNTDNVVAVGLVYQF
CCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9274033 [H]