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The map label for this gene is ydeF [H]

Identifier: 22126532

GI number: 22126532

Start: 2925308

End: 2926489

Strand: Direct

Name: ydeF [H]

Synonym: y2653

Alternate gene names: 22126532

Gene position: 2925308-2926489 (Clockwise)

Preceding gene: 22126531

Following gene: 22126533

Centisome position: 63.58

GC content: 46.19

Gene sequence:

>1182_bases
ATGCAAAGATTCTCATCGCGCGTAACCAATCTGCTGATTGCTTCGTTGGTGTTGACCATAGGGCGTGCAGTTACCTTACC
GTTCATTACTATTTATTTGGTCGAGCATTTTCAACTGGCCCCAGATACCGTTGGCCTGCTATTGGGTGCCAGTTTAGCCT
TGGGTATTTTTACCAGTCTGTATGGCGGTTATCTGGTCGATAAATTTAATAAAAAACGATTGATTTTACTGACGATAATC
CTATTCTCAGCCACTTTTTTTGCATTACCGTGGATTGAACATCCCGCTTGGGTCATTTTAACTCTGGCGCTACTGCATTC
GGCCTACTCAGTCTACACTATCGCGGTAAAAGCGTGCTTTGCCGACTGGCTACCGGTCAATGAACGTATTAAAGCGTTTT
CAGCCAACTACACGCTGGTCAATGTGGGTTGGGCTATCGGCCCGGTAATGGGGGTATTAGTGGTGGGTTTCGGCCCACAA
CTGCCTTTTATCATTTCAGGCGCATTGGCTTTATTGGTTGCTATCGTGCTGAAATTCAGGATAAATGACGCCGATATGTT
AGCGACTGAACGGGTGTCTAGCGAATCAGTACCTGACCTTCGCCAAACATTCAATATATTGCGTCACGATAAGCGGCTGA
TTTACTTTACGCTCGGTAGCCTGCTCGGCGCCATGGTATTCGCTCAGTTCTCCGGTTACCTCTCCCAATATCTGATCACG
GTATTCGACGCCAAATTTGCTTATCAGGTGATTGGGGCGGTAATGACCGTCAATGCGACCATCGTCATTGCTCTGCAATA
TCTATTAAGCCGCCGGATGAACCAACAGAATTTGATGCGTTGGCTCATGATAGGCACCCTGTTCTTTATTATTGGTTTGC
TAGGATTTATGGTAGCTCAGGATTCCATTCCGTTATGGATGCTGGCAATGGCCATTTTCTCATTGGGCGAAATTATTGTT
ATTCCAGCCGAATACCTGTTTATCGACTTTATTGCTCCAGCAAACCTCAAAGGCAGTTACTATGGGGTGCAGAACCTTGG
TCAACTCGGCGGAGCAATTAACCCGGTACTCTGTGGTTTTCTGCTAGCCTACACGGTGCCCGAAATGATGTTTTATATGC
TAATTATTGCGGCTACTTTAGGTCTGGTGCTCTTCTATCGCGGCTACCATTTGGCAAAATAG

Upstream 100 bases:

>100_bases
ATTCAGCTGAGTCGCCAAAAGTCTAGCAGGCCCGTTTTTTGCTTAAATTTCGCAAAAAAGCAATTGATTATTCTATAAAT
CACTAAAAATAAGAAAATAC

Downstream 100 bases:

>100_bases
CGACCAAATAAGGCATTGAAAGTACGCTATCCCGATGAGAGAAAATAATTTGTATGCGCGCTCACCCAAAAACTCCCGTC
GTCAGAATACGTTAGGTGGC

Product: transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MQRFSSRVTNLLIASLVLTIGRAVTLPFITIYLVEHFQLAPDTVGLLLGASLALGIFTSLYGGYLVDKFNKKRLILLTII
LFSATFFALPWIEHPAWVILTLALLHSAYSVYTIAVKACFADWLPVNERIKAFSANYTLVNVGWAIGPVMGVLVVGFGPQ
LPFIISGALALLVAIVLKFRINDADMLATERVSSESVPDLRQTFNILRHDKRLIYFTLGSLLGAMVFAQFSGYLSQYLIT
VFDAKFAYQVIGAVMTVNATIVIALQYLLSRRMNQQNLMRWLMIGTLFFIIGLLGFMVAQDSIPLWMLAMAIFSLGEIIV
IPAEYLFIDFIAPANLKGSYYGVQNLGQLGGAINPVLCGFLLAYTVPEMMFYMLIIAATLGLVLFYRGYHLAK

Sequences:

>Translated_393_residues
MQRFSSRVTNLLIASLVLTIGRAVTLPFITIYLVEHFQLAPDTVGLLLGASLALGIFTSLYGGYLVDKFNKKRLILLTII
LFSATFFALPWIEHPAWVILTLALLHSAYSVYTIAVKACFADWLPVNERIKAFSANYTLVNVGWAIGPVMGVLVVGFGPQ
LPFIISGALALLVAIVLKFRINDADMLATERVSSESVPDLRQTFNILRHDKRLIYFTLGSLLGAMVFAQFSGYLSQYLIT
VFDAKFAYQVIGAVMTVNATIVIALQYLLSRRMNQQNLMRWLMIGTLFFIIGLLGFMVAQDSIPLWMLAMAIFSLGEIIV
IPAEYLFIDFIAPANLKGSYYGVQNLGQLGGAINPVLCGFLLAYTVPEMMFYMLIIAATLGLVLFYRGYHLAK
>Mature_393_residues
MQRFSSRVTNLLIASLVLTIGRAVTLPFITIYLVEHFQLAPDTVGLLLGASLALGIFTSLYGGYLVDKFNKKRLILLTII
LFSATFFALPWIEHPAWVILTLALLHSAYSVYTIAVKACFADWLPVNERIKAFSANYTLVNVGWAIGPVMGVLVVGFGPQ
LPFIISGALALLVAIVLKFRINDADMLATERVSSESVPDLRQTFNILRHDKRLIYFTLGSLLGAMVFAQFSGYLSQYLIT
VFDAKFAYQVIGAVMTVNATIVIALQYLLSRRMNQQNLMRWLMIGTLFFIIGLLGFMVAQDSIPLWMLAMAIFSLGEIIV
IPAEYLFIDFIAPANLKGSYYGVQNLGQLGGAINPVLCGFLLAYTVPEMMFYMLIIAATLGLVLFYRGYHLAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787815, Length=369, Percent_Identity=37.940379403794, Blast_Score=260, Evalue=1e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43592; Mature: 43592

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRFSSRVTNLLIASLVLTIGRAVTLPFITIYLVEHFQLAPDTVGLLLGASLALGIFTSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
YGGYLVDKFNKKRLILLTIILFSATFFALPWIEHPAWVILTLALLHSAYSVYTIAVKACF
HCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ADWLPVNERIKAFSANYTLVNVGWAIGPVMGVLVVGFGPQLPFIISGALALLVAIVLKFR
HHCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
INDADMLATERVSSESVPDLRQTFNILRHDKRLIYFTLGSLLGAMVFAQFSGYLSQYLIT
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFDAKFAYQVIGAVMTVNATIVIALQYLLSRRMNQQNLMRWLMIGTLFFIIGLLGFMVAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
DSIPLWMLAMAIFSLGEIIVIPAEYLFIDFIAPANLKGSYYGVQNLGQLGGAINPVLCGF
CCCHHHHHHHHHHCCCCEEEEEHHHHHHEEECCCCCCCCHHCHHHHHHHCCCCHHHHHHH
LLAYTVPEMMFYMLIIAATLGLVLFYRGYHLAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCC
>Mature Secondary Structure
MQRFSSRVTNLLIASLVLTIGRAVTLPFITIYLVEHFQLAPDTVGLLLGASLALGIFTSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
YGGYLVDKFNKKRLILLTIILFSATFFALPWIEHPAWVILTLALLHSAYSVYTIAVKACF
HCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ADWLPVNERIKAFSANYTLVNVGWAIGPVMGVLVVGFGPQLPFIISGALALLVAIVLKFR
HHCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
INDADMLATERVSSESVPDLRQTFNILRHDKRLIYFTLGSLLGAMVFAQFSGYLSQYLIT
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VFDAKFAYQVIGAVMTVNATIVIALQYLLSRRMNQQNLMRWLMIGTLFFIIGLLGFMVAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
DSIPLWMLAMAIFSLGEIIVIPAEYLFIDFIAPANLKGSYYGVQNLGQLGGAINPVLCGF
CCCHHHHHHHHHHCCCCEEEEEHHHHHHEEECCCCCCCCHHCHHHHHHHCCCCHHHHHHH
LLAYTVPEMMFYMLIIAATLGLVLFYRGYHLAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8383113; 9097039; 9278503 [H]