Click here to switch to the map view.

The map label for this gene is ycdO [H]

Identifier: 22126334

GI number: 22126334

Start: 2713796

End: 2714950

Strand: Reverse

Name: ycdO [H]

Synonym: y2451

Alternate gene names: 22126334

Gene position: 2714950-2713796 (Counterclockwise)

Preceding gene: 22126335

Following gene: 22126333

Centisome position: 59.01

GC content: 46.75

Gene sequence:

>1155_bases
ATGATCAGTTCAGGGAGTTATTACATGTCTATTTGGTTCTTCCGTCGCACAGCGTTACACGCCGCGTTGTTGTCTCTGCC
TGTTTTCGCTATCAGCGCACAGGCTGCTGATATTCAACAGGTTAAAATCACTGTCAATGATAAACAATGTGAGCCAATGG
CACTGACGGTTCCTGCCGGCAAAACACAGTTTATTGTGCACAATGTTAGCCAGAAAGGACTGGAGTGGGAGATTTTAAAA
GGGGTAATGGTGGTGGAGGAGCGTGAGAATATCGCGCCAGGTTTTACCCAAAAAATGACGGCGAATCTGGAACCTGGTGA
ATATGATATGACCTGCGGCTTGTTAAGTAATCCGAAAGGTAAATTAACTGTAACTGTGGCAGCAGGTGAACAAGCCCCGG
TGAAACCCGATGCGATGGCATTAGTCGGCCCGATTGCTGAATATAAGGTTTATGTCACACAAGAAGTGGCTCAGTTAGTC
AGCCAAACCAAAGCGTTCACCGATGCAGTGAAGGCTGGGGATCTGGCACTGGCACGTAAATTGTATGCGCCGACTCGCCA
GCATTATGAGCGTATCGAACCGATTGCCGAACTGTTCTCTGATTTGGACGGCAGTATTGATGCCCGTGAAGATGATTTTG
AACAGAAATCGGCAGACCCTAAATTTACCGGTTTCCACCGTTTAGAAAAAATCCTGTTTGGAGATAACACAACCAAAGGT
GCAGATAAGTTTGCAGACCTGTTGTATCAGGACACATTGGAACTGCAAAAACGCATTGCTGGTCTGACATTTGCGCCTAA
TAAAGTGGTGGGAGGGGCGGCAGGGTTAATTGAGGAAGTCGCAGCCAGTAAAATTAGCGGGGAAGAAGACCGCTATAGCC
GTACCGATTTGTGGGATTTTCAAGCCAACGTCGATGGCGCACAGAAAATTGTCAATCTCCTGAGGCCATTACTGGAAAAA
GCAGATAAACCATTACTGCAAAAAATTGATGCGAATTTTAACACGGTTGATAGCGTGCTGGCGAAATATCGTACCAAAGA
GGGTTATGAATCCTACGAGAAGCTAACCGATGCGGATCGTAATGCGATGAAAGGACCAATCACTGCTCTGGCGGAAGACC
TTGCTCAACTGCGTGGTGTATTAGGTCTGGATTGA

Upstream 100 bases:

>100_bases
TTATCTATCTTATTCCGGCGTTGATTCTGTTTTTCCTTCCACCACGTTCCACTGCGGGTTCGGCTATCGCTGCGGCGCGG
AAAATTAATCCATAACTAAA

Downstream 100 bases:

>100_bases
GGTTGTTAACATGAGAGACAAAACCGGCCCGAAATTCGGGCCGTATCAACCGGATGATGAGGCGGTGTCGCCGTCACGTC
GGCGTTTAATTTTAGGGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MISSGSYYMSIWFFRRTALHAALLSLPVFAISAQAADIQQVKITVNDKQCEPMALTVPAGKTQFIVHNVSQKGLEWEILK
GVMVVEERENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQLV
SQTKAFTDAVKAGDLALARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKG
ADKFADLLYQDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLEK
ADKPLLQKIDANFNTVDSVLAKYRTKEGYESYEKLTDADRNAMKGPITALAEDLAQLRGVLGLD

Sequences:

>Translated_384_residues
MISSGSYYMSIWFFRRTALHAALLSLPVFAISAQAADIQQVKITVNDKQCEPMALTVPAGKTQFIVHNVSQKGLEWEILK
GVMVVEERENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQLV
SQTKAFTDAVKAGDLALARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKG
ADKFADLLYQDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLEK
ADKPLLQKIDANFNTVDSVLAKYRTKEGYESYEKLTDADRNAMKGPITALAEDLAQLRGVLGLD
>Mature_384_residues
MISSGSYYMSIWFFRRTALHAALLSLPVFAISAQAADIQQVKITVNDKQCEPMALTVPAGKTQFIVHNVSQKGLEWEILK
GVMVVEERENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQLV
SQTKAFTDAVKAGDLALARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKG
ADKFADLLYQDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLEK
ADKPLLQKIDANFNTVDSVLAKYRTKEGYESYEKLTDADRNAMKGPITALAEDLAQLRGVLGLD

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=371, Percent_Identity=74.1239892183288, Blast_Score=568, Evalue=1e-163,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 42243; Mature: 42243

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSGSYYMSIWFFRRTALHAALLSLPVFAISAQAADIQQVKITVNDKQCEPMALTVPAG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEECCC
KTQFIVHNVSQKGLEWEILKGVMVVEERENIAPGFTQKMTANLEPGEYDMTCGLLSNPKG
CCEEEEECCHHCCCCHHHHHCCCEEECCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCC
KLTVTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTDAVKAGDLALARK
CEEEEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKG
HHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCH
ADKFADLLYQDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
QANVDGAQKIVNLLRPLLEKADKPLLQKIDANFNTVDSVLAKYRTKEGYESYEKLTDADR
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NAMKGPITALAEDLAQLRGVLGLD
HHHCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MISSGSYYMSIWFFRRTALHAALLSLPVFAISAQAADIQQVKITVNDKQCEPMALTVPAG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEECCC
KTQFIVHNVSQKGLEWEILKGVMVVEERENIAPGFTQKMTANLEPGEYDMTCGLLSNPKG
CCEEEEECCHHCCCCHHHHHCCCEEECCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCC
KLTVTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTDAVKAGDLALARK
CEEEEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKG
HHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCH
ADKFADLLYQDTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
QANVDGAQKIVNLLRPLLEKADKPLLQKIDANFNTVDSVLAKYRTKEGYESYEKLTDADR
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NAMKGPITALAEDLAQLRGVLGLD
HHHCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA