Click here to switch to the map view.

The map label for this gene is ypdF [C]

Identifier: 22126244

GI number: 22126244

Start: 2604061

End: 2605278

Strand: Reverse

Name: ypdF [C]

Synonym: y2360

Alternate gene names: 22126244

Gene position: 2605278-2604061 (Counterclockwise)

Preceding gene: 22126245

Following gene: 229013128

Centisome position: 56.63

GC content: 45.57

Gene sequence:

>1218_bases
GTGGGTAAAGAAAAAATTGAGCATTTAGAAGCAGTAAGCCGTAAAGCCCGCGTGGTCATGGAGCGTGAGGGGATTGATGC
GCTGGTGGTGACTGTTTGTGACAATTTCTATTATCTCACGGGTTTTGCCAGCTTCTTTATGTATACCTTCCGGCATACCG
GTGCGGCGGTTGCGATCATGTTTCGTGATGCGAATATCCCTTCACAAATCATCATGAATGAATTTGAGGCTGCCAGTACG
CATTTTGATATGCCGAATAGTGTACTGAAAACGTTTCCGGTGTGGGTTGATGTTGATGACCCGCGTAATCCGCATCATCA
TTATAAAAAACGTGATCGGCCTATTGGCCCACCAGTGGAAGCGGTCTTTAGTTTAGTTAAAAACGCACTTGAAGATGCGG
GAGTGCTGGATAAGACGATTGCCATTGAATTACAGGCGATGTCAAACGGCGGTAAAGGTGTATTAGATAAAGTTGCACCT
GGGCTGAAATTAGTCGATTCAACGGCATTGTTCAATGAAATAAGAATGATTAAAAGCCCGTGGGAAATTGAACACCTACG
AAAAAGTGCTGAAATCACTGAATATGGTATTGCCAGCGCGGCTAAAAAAATACGGGTAGGGTGTACGGCAGCTGAATTGA
CTGCTGCATTTAAAGCGGCGGTAATGTCGTTCCCAGAAACGAACTTTTCACGCTTTAATCTGATCTCGGTGGGGGACAAT
TTCTCACCAAAAATAATCGCAGATACGACACCGGCAAAAGTGGGGGATTTGATTAAGTTTGACTGCGGGATCGATGTTGC
TGGCTACGGTGCTGATCTGGCAAGAACGTTTGTGCTCGGTGAGCCGGATAAACTGACGCAGCAGATATATGACACCATCA
GAACGGGTCATGAGCATATGCTATCAATGGTGGCACCGGGGGTGAAATTAAAAGCGGTTTTTGACTCCACGATGGCGGTG
ATTAAGACGTCAGGTTTACCTCATTATAACCGGGGCCATCTTGGGCACGGTGATGGTGTGTTTCTGGGCCTTGAAGAAGT
GCCTTTTGTTAGCACACAGGCAACTGAAACGTTTTGTCCCGGTATGGTCTTAAGCCTTGAAACGCCTTATTACGGCATTG
GGGTTGGCTCAATTATGTTAGAAGACATGATCTTAATTACTGACAGTGGCTTTGAGTTTTTAAGCAAACTGGATCGTGAC
TTACGTCGGTATTTCTAA

Upstream 100 bases:

>100_bases
TTTCAGGCGGCTGAAAATCAACATTTATGCAACTTAATGTCAGGCATGTATCAATAATAGTGGTGTTGCTACATGATATT
TAAAAACAAAGGATAATCGC

Downstream 100 bases:

>100_bases
TTTATTCATTGTATCGTAGCCCGGATAAAACAGATTCATCTAATTTTCGCTGGATCTGTTTTCATCGTGTCGCTCTGTCA
GATGCTTAGATTTTAAAGTG

Product: putative endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MGKEKIEHLEAVSRKARVVMEREGIDALVVTVCDNFYYLTGFASFFMYTFRHTGAAVAIMFRDANIPSQIIMNEFEAAST
HFDMPNSVLKTFPVWVDVDDPRNPHHHYKKRDRPIGPPVEAVFSLVKNALEDAGVLDKTIAIELQAMSNGGKGVLDKVAP
GLKLVDSTALFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNFSRFNLISVGDN
FSPKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAV
IKTSGLPHYNRGHLGHGDGVFLGLEEVPFVSTQATETFCPGMVLSLETPYYGIGVGSIMLEDMILITDSGFEFLSKLDRD
LRRYF

Sequences:

>Translated_405_residues
MGKEKIEHLEAVSRKARVVMEREGIDALVVTVCDNFYYLTGFASFFMYTFRHTGAAVAIMFRDANIPSQIIMNEFEAAST
HFDMPNSVLKTFPVWVDVDDPRNPHHHYKKRDRPIGPPVEAVFSLVKNALEDAGVLDKTIAIELQAMSNGGKGVLDKVAP
GLKLVDSTALFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNFSRFNLISVGDN
FSPKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAV
IKTSGLPHYNRGHLGHGDGVFLGLEEVPFVSTQATETFCPGMVLSLETPYYGIGVGSIMLEDMILITDSGFEFLSKLDRD
LRRYF
>Mature_404_residues
GKEKIEHLEAVSRKARVVMEREGIDALVVTVCDNFYYLTGFASFFMYTFRHTGAAVAIMFRDANIPSQIIMNEFEAASTH
FDMPNSVLKTFPVWVDVDDPRNPHHHYKKRDRPIGPPVEAVFSLVKNALEDAGVLDKTIAIELQAMSNGGKGVLDKVAPG
LKLVDSTALFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNFSRFNLISVGDNF
SPKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVI
KTSGLPHYNRGHLGHGDGVFLGLEEVPFVSTQATETFCPGMVLSLETPYYGIGVGSIMLEDMILITDSGFEFLSKLDRDL
RRYF

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Escherichia coli, GI1788728, Length=240, Percent_Identity=28.3333333333333, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789275, Length=285, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 44660; Mature: 44529

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKEKIEHLEAVSRKARVVMEREGIDALVVTVCDNFYYLTGFASFFMYTFRHTGAAVAIM
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHHHHCCCEEEEEE
FRDANIPSQIIMNEFEAASTHFDMPNSVLKTFPVWVDVDDPRNPHHHYKKRDRPIGPPVE
EECCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCEEEECCCCCCCHHHHHHCCCCCCCCHH
AVFSLVKNALEDAGVLDKTIAIELQAMSNGGKGVLDKVAPGLKLVDSTALFNEIRMIKSP
HHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCHHHHCCCCEEHHHHHHHHHHHHHCCC
WEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNFSRFNLISVGDN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
FSPKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHM
CCCEEEECCCCHHHCCEEEECCCCCCCCCCHHHHHHEECCCCHHHHHHHHHHHHCCHHHH
LSMVAPGVKLKAVFDSTMAVIKTSGLPHYNRGHLGHGDGVFLGLEEVPFVSTQATETFCP
HHHHCCCCEEEHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHCC
GMVLSLETPYYGIGVGSIMLEDMILITDSGFEFLSKLDRDLRRYF
CEEEEECCCCEECCHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GKEKIEHLEAVSRKARVVMEREGIDALVVTVCDNFYYLTGFASFFMYTFRHTGAAVAIM
CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHHHHCCCEEEEEE
FRDANIPSQIIMNEFEAASTHFDMPNSVLKTFPVWVDVDDPRNPHHHYKKRDRPIGPPVE
EECCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCEEEECCCCCCCHHHHHHCCCCCCCCHH
AVFSLVKNALEDAGVLDKTIAIELQAMSNGGKGVLDKVAPGLKLVDSTALFNEIRMIKSP
HHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCHHHHCCCCEEHHHHHHHHHHHHHCCC
WEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNFSRFNLISVGDN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
FSPKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTFVLGEPDKLTQQIYDTIRTGHEHM
CCCEEEECCCCHHHCCEEEECCCCCCCCCCHHHHHHEECCCCHHHHHHHHHHHHCCHHHH
LSMVAPGVKLKAVFDSTMAVIKTSGLPHYNRGHLGHGDGVFLGLEEVPFVSTQATETFCP
HHHHCCCCEEEHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHCC
GMVLSLETPYYGIGVGSIMLEDMILITDSGFEFLSKLDRDLRRYF
CEEEEECCCCEECCHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA