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The map label for this gene is rnfD [H]

Identifier: 22125973

GI number: 22125973

Start: 2293963

End: 2295120

Strand: Reverse

Name: rnfD [H]

Synonym: y2083

Alternate gene names: 22125973

Gene position: 2295120-2293963 (Counterclockwise)

Preceding gene: 22125975

Following gene: 22125972

Centisome position: 49.89

GC content: 50.35

Gene sequence:

>1158_bases
TTGCCCACGCGATCCCTACGTTTGAAAGCCCTGATAAGTATTCTGACATATGGTTGCAATTTCATGAAATTCAGGCCTGT
AACACCGACCCAGAACAAAGGGTTGCAGATTGCCAGTTCCCCTTTTACCCACAATCAACGCAGTACCCGTCGTATTATGC
TGCTGGTTATTCTGGCCTGTATTCCGGGGATTATCGCCCAGACTTACTTCTTCGGTTATGGCAGCCTGATTCAAGTCATG
CTGGCTATGATCACTGCACTGTTGGCCGAAGGTGCCGTATTGCAGTTACGTAAACAACCCGTCATGGCGCGGTTACAAGA
TAACTCAGCCCTACTGACTGCCTTATTGTTGGGGATAAGCCTCCCCCCATTGGCCCCCTGGTGGATGATCGTGCTGGGCA
CGCTATTTGCTATTGTCATTGCCAAACAACTCTATGGTGGCCTAGGGCAGAACCCGTTTAACCCGGCAATGGTCGGTTAT
GTTGTGCTCCTTATTTCATTTCCGGTACAAATGACCAGTTGGCTGCCACCGCTACCGTTGCAAGGAACGTCGGTGGGATT
CTATGACAGTCTCTTAACCATTTTCACCGGTTATACCCACAGTGGTGAGAATATTCATCAGCTCCAAGTTGGCTATGACG
GCATCAGCCAAGCGACGCCACTGGATACGTTTAAGACCTCGCTACGTTCACAGCCAGCAGATCAAATTCTGCAACAGCCC
ATATTTGGCGGTGTGCTGGCGGGTTTAGGCTGGCAATGGGTTAATACCGGCTTTCTGGTTGGCGGCTTATTGCTACTGTG
GCGTAAAGCTATTCACTGGCATATTCCCGTGAGCTTCCTGCTCGCCTTAGGAGGTTGTGCCGCAGTGAGCTGGATGATTG
CTCCACAAAGCTTTGCCTCACCAATGCTACATTTGTTCTCCGGTGCCACCATGTTAGGTGCATTTTTCATTGCTACCGAT
CCTGTCAGTGCCTCTACAACACCCCGTGGCCGCCTGATATTTGGTGCCCTCATTGGTATTCTGGTGTGGCTAATCCGGGT
ATATGGCGGCTATCCGGATAGTGTTGCTTTTGCCGTGTTGCTCGCCAATATTACAGTTCCGTTGATTGACCACTATACCC
AACCTCGGGTCTATGGCCATAAAAGCGGGCACAAATAA

Upstream 100 bases:

>100_bases
AACCCTATAATTAAGACGTATTACACTCTGTCTGGATAGGGTAGAATGCAACAAAATATCACCCCTAACGGCTACGTGTA
TTGACGCCAGCAAGGATGAC

Downstream 100 bases:

>100_bases
GGAGCCGTTATGCTAAAAACAATGAGGCGTCACGGCATCACTCTCGCGCTGTTTGCTGCCGGTGCCACAGGGTTAACTGC
GGTTGTTAACTCACTGACTG

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MPTRSLRLKALISILTYGCNFMKFRPVTPTQNKGLQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVM
LAMITALLAEGAVLQLRKQPVMARLQDNSALLTALLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFNPAMVGY
VVLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTIFTGYTHSGENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQP
IFGGVLAGLGWQWVNTGFLVGGLLLLWRKAIHWHIPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATD
PVSASTTPRGRLIFGALIGILVWLIRVYGGYPDSVAFAVLLANITVPLIDHYTQPRVYGHKSGHK

Sequences:

>Translated_385_residues
MPTRSLRLKALISILTYGCNFMKFRPVTPTQNKGLQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVM
LAMITALLAEGAVLQLRKQPVMARLQDNSALLTALLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFNPAMVGY
VVLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTIFTGYTHSGENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQP
IFGGVLAGLGWQWVNTGFLVGGLLLLWRKAIHWHIPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATD
PVSASTTPRGRLIFGALIGILVWLIRVYGGYPDSVAFAVLLANITVPLIDHYTQPRVYGHKSGHK
>Mature_384_residues
PTRSLRLKALISILTYGCNFMKFRPVTPTQNKGLQIASSPFTHNQRSTRRIMLLVILACIPGIIAQTYFFGYGSLIQVML
AMITALLAEGAVLQLRKQPVMARLQDNSALLTALLLGISLPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFNPAMVGYV
VLLISFPVQMTSWLPPLPLQGTSVGFYDSLLTIFTGYTHSGENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQPI
FGGVLAGLGWQWVNTGFLVGGLLLLWRKAIHWHIPVSFLLALGGCAAVSWMIAPQSFASPMLHLFSGATMLGAFFIATDP
VSASTTPRGRLIFGALIGILVWLIRVYGGYPDSVAFAVLLANITVPLIDHYTQPRVYGHKSGHK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=349, Percent_Identity=68.7679083094556, Blast_Score=498, Evalue=1e-142,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 41960; Mature: 41829

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTRSLRLKALISILTYGCNFMKFRPVTPTQNKGLQIASSPFTHNQRSTRRIMLLVILAC
CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHH
IPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVLQLRKQPVMARLQDNSALLTALLLGIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHCCCHHHHHHHHHHCC
LPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFNPAMVGYVVLLISFPVQMTSWLPPLPL
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
QGTSVGFYDSLLTIFTGYTHSGENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQP
CCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHCH
IFGGVLAGLGWQWVNTGFLVGGLLLLWRKAIHWHIPVSFLLALGGCAAVSWMIAPQSFAS
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHH
PMLHLFSGATMLGAFFIATDPVSASTTPRGRLIFGALIGILVWLIRVYGGYPDSVAFAVL
HHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LANITVPLIDHYTQPRVYGHKSGHK
HHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PTRSLRLKALISILTYGCNFMKFRPVTPTQNKGLQIASSPFTHNQRSTRRIMLLVILAC
CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHH
IPGIIAQTYFFGYGSLIQVMLAMITALLAEGAVLQLRKQPVMARLQDNSALLTALLLGIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHCCCHHHHHHHHHHCC
LPPLAPWWMIVLGTLFAIVIAKQLYGGLGQNPFNPAMVGYVVLLISFPVQMTSWLPPLPL
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
QGTSVGFYDSLLTIFTGYTHSGENIHQLQVGYDGISQATPLDTFKTSLRSQPADQILQQP
CCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHCH
IFGGVLAGLGWQWVNTGFLVGGLLLLWRKAIHWHIPVSFLLALGGCAAVSWMIAPQSFAS
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHH
PMLHLFSGATMLGAFFIATDPVSASTTPRGRLIFGALIGILVWLIRVYGGYPDSVAFAVL
HHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LANITVPLIDHYTQPRVYGHKSGHK
HHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]