Click here to switch to the map view.

The map label for this gene is yjgF [C]

Identifier: 22125723

GI number: 22125723

Start: 2015426

End: 2015833

Strand: Reverse

Name: yjgF [C]

Synonym: y1830

Alternate gene names: 22125723

Gene position: 2015833-2015426 (Counterclockwise)

Preceding gene: 22125724

Following gene: 22125722

Centisome position: 43.82

GC content: 42.65

Gene sequence:

>408_bases
TTGCCCCAACACCACAACAGGAATCGTCGAATGATTATTAAAACTCAAAACGCACCAGCAGCTATCGGACCATACTCCCA
AGGCGTTGTCGCCGGTAATTTGCTTTTTATTTCCGGTTGCTGCCCTTTCAGTGAAAAAGATGGATCAGTCGTAGGTATTG
ATATTACAGAGCAAACCATTCAAGCCATGAAAAACCTAAAGGCTATTGTGGAAGCCACCGGTAGTTATATGAATGACGTG
GTTAAAACCACTTGCTTTATCAGTGATATGAACAATTTTCAGTCATTCAATACCATTTACGCGGGCTATTTCCCATCAGG
GACATTCCCTGCCCGTTCATGTGTTGAAGTCGCTCGGCTACCAAAAGACGTTCTCATTGAAGTAGAGGCTATTGTCTCTC
TAAAATAA

Upstream 100 bases:

>100_bases
CCGACAAAATATCGCCAGAGTTACTACAAGAGCTTATGCAAGCTCAGGACCACTGTGTTTATACATCGGTTCAAGTGCTC
AAAGCACTGCGTGATAAATA

Downstream 100 bases:

>100_bases
GGTAGGAATATTGTGAATAAATGGACAAAGCTTTGCTTCCTCATTTTGGGTGGAGGGACGATTTTCAAACTCTCCAGTAT
GAAAGATGTGTTTTACATCC

Product: YjgF-family lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MPQHHNRNRRMIIKTQNAPAAIGPYSQGVVAGNLLFISGCCPFSEKDGSVVGIDITEQTIQAMKNLKAIVEATGSYMNDV
VKTTCFISDMNNFQSFNTIYAGYFPSGTFPARSCVEVARLPKDVLIEVEAIVSLK

Sequences:

>Translated_135_residues
MPQHHNRNRRMIIKTQNAPAAIGPYSQGVVAGNLLFISGCCPFSEKDGSVVGIDITEQTIQAMKNLKAIVEATGSYMNDV
VKTTCFISDMNNFQSFNTIYAGYFPSGTFPARSCVEVARLPKDVLIEVEAIVSLK
>Mature_134_residues
PQHHNRNRRMIIKTQNAPAAIGPYSQGVVAGNLLFISGCCPFSEKDGSVVGIDITEQTIQAMKNLKAIVEATGSYMNDVV
KTTCFISDMNNFQSFNTIYAGYFPSGTFPARSCVEVARLPKDVLIEVEAIVSLK

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=122, Percent_Identity=43.4426229508197, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87082396, Length=121, Percent_Identity=55.3719008264463, Blast_Score=133, Evalue=5e-33,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=46.7741935483871, Blast_Score=119, Evalue=8e-29,
Organism=Escherichia coli, GI1787245, Length=125, Percent_Identity=28, Blast_Score=75, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=43.4426229508197, Blast_Score=106, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=43.4426229508197, Blast_Score=106, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=43.4426229508197, Blast_Score=106, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6322138, Length=119, Percent_Identity=39.4957983193277, Blast_Score=94, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=42.156862745098, Blast_Score=82, Evalue=2e-17,
Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=40.1639344262295, Blast_Score=101, Evalue=2e-22,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14749; Mature: 14618

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQHHNRNRRMIIKTQNAPAAIGPYSQGVVAGNLLFISGCCPFSEKDGSVVGIDITEQTI
CCCCCCCCCEEEEEECCCCCCCCCCCCCEEECCEEEEECCCCCCCCCCCEEEEECCHHHH
QAMKNLKAIVEATGSYMNDVVKTTCFISDMNNFQSFNTIYAGYFPSGTFPARSCVEVARL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCEEEEEECCCCCCCHHHHHHHHHC
PKDVLIEVEAIVSLK
CHHHEEEEHHEEECC
>Mature Secondary Structure 
PQHHNRNRRMIIKTQNAPAAIGPYSQGVVAGNLLFISGCCPFSEKDGSVVGIDITEQTI
CCCCCCCCEEEEEECCCCCCCCCCCCCEEECCEEEEECCCCCCCCCCCEEEEECCHHHH
QAMKNLKAIVEATGSYMNDVVKTTCFISDMNNFQSFNTIYAGYFPSGTFPARSCVEVARL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCEEEEEECCCCCCCHHHHHHHHHC
PKDVLIEVEAIVSLK
CHHHEEEEHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]