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The map label for this gene is ycfJ [H]

Identifier: 22125676

GI number: 22125676

Start: 1961277

End: 1961843

Strand: Direct

Name: ycfJ [H]

Synonym: y1782

Alternate gene names: 22125676

Gene position: 1961277-1961843 (Clockwise)

Preceding gene: 22125675

Following gene: 22125677

Centisome position: 42.63

GC content: 49.03

Gene sequence:

>567_bases
GTGGTAACATTTTCAGGAGGATTTCCTGTGAACAAATCAATGTTAGCCGGTGTGGGGATTGGTATTGCCGCCGCTCTGGG
AATTGCTGCAGTGGCGAATATAGATGTCTTCTCCAGTGCACCACAATATGCCAAAGTGCTTACTGCAACCCCGATAAAAG
AGACCATCAAAACGCCTCGTCAAGAGTGCCGTAACGTGACAGTGACGCACCGCAAACCAGTACAAGACGAAAATAAGATC
GCAGGCTCAGTTTTGGGTGCAGTCGCAGGTGGGGTGTTGGGGCATCAGGTCGGTGGTGGCCGTGGTAAGGATATCGCTAC
CGTAGCGGGTGCGTTAGCGGGAGGATATGCAGGTAATCGTGTGCAAAATAATATGCAGGAAAATGATACCTATACCACAA
CCCAACAGCGTTGCCAGACCGTGTATGACAAATCACAGAAGACGCTGGGATATGACGTAACCTACAAAATTGGCGATCAG
CAGGGAAAAATTCGTATGGATCGTGATCCAGGTATGCAGATCCCCATTGATAAAAATGGTCAACTGGTGCTGAACAACCG
AGCGTAA

Upstream 100 bases:

>100_bases
ATCCCGGTATTTTAGAGGGCAACTCTCTGTATCGGGCGTGGTCAGATTTTTGTTTTTATGACGAAAATGCGTCTATGCAA
AATTCTGATACAAAAAGTGC

Downstream 100 bases:

>100_bases
TACCAAATCTGTTATCCAAGACCTTGTACCAAGAACCCGCGGAGATAGTGTTAGTTCTGATCGTTTAGCCAGAAAGAGCG
TTCAGCCAGCTAAATGGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MVTFSGGFPVNKSMLAGVGIGIAAALGIAAVANIDVFSSAPQYAKVLTATPIKETIKTPRQECRNVTVTHRKPVQDENKI
AGSVLGAVAGGVLGHQVGGGRGKDIATVAGALAGGYAGNRVQNNMQENDTYTTTQQRCQTVYDKSQKTLGYDVTYKIGDQ
QGKIRMDRDPGMQIPIDKNGQLVLNNRA

Sequences:

>Translated_188_residues
MVTFSGGFPVNKSMLAGVGIGIAAALGIAAVANIDVFSSAPQYAKVLTATPIKETIKTPRQECRNVTVTHRKPVQDENKI
AGSVLGAVAGGVLGHQVGGGRGKDIATVAGALAGGYAGNRVQNNMQENDTYTTTQQRCQTVYDKSQKTLGYDVTYKIGDQ
QGKIRMDRDPGMQIPIDKNGQLVLNNRA
>Mature_188_residues
MVTFSGGFPVNKSMLAGVGIGIAAALGIAAVANIDVFSSAPQYAKVLTATPIKETIKTPRQECRNVTVTHRKPVQDENKI
AGSVLGAVAGGVLGHQVGGGRGKDIATVAGALAGGYAGNRVQNNMQENDTYTTTQQRCQTVYDKSQKTLGYDVTYKIGDQ
QGKIRMDRDPGMQIPIDKNGQLVLNNRA

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=178, Percent_Identity=79.7752808988764, Blast_Score=286, Evalue=6e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 19835; Mature: 19835

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTFSGGFPVNKSMLAGVGIGIAAALGIAAVANIDVFSSAPQYAKVLTATPIKETIKTPR
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHCCCHHHHHHHHH
QECRNVTVTHRKPVQDENKIAGSVLGAVAGGVLGHQVGGGRGKDIATVAGALAGGYAGNR
HHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCH
VQNNMQENDTYTTTQQRCQTVYDKSQKTLGYDVTYKIGDQQGKIRMDRDPGMQIPIDKNG
HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEECCCCCCEEEECCCC
QLVLNNRA
CEEECCCC
>Mature Secondary Structure
MVTFSGGFPVNKSMLAGVGIGIAAALGIAAVANIDVFSSAPQYAKVLTATPIKETIKTPR
CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHCCCHHHHHHHHH
QECRNVTVTHRKPVQDENKIAGSVLGAVAGGVLGHQVGGGRGKDIATVAGALAGGYAGNR
HHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCH
VQNNMQENDTYTTTQQRCQTVYDKSQKTLGYDVTYKIGDQQGKIRMDRDPGMQIPIDKNG
HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEECCCCCCEEEECCCC
QLVLNNRA
CEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]