Click here to switch to the map view.

The map label for this gene is yddW [H]

Identifier: 22125544

GI number: 22125544

Start: 1821509

End: 1822792

Strand: Reverse

Name: yddW [H]

Synonym: y1649

Alternate gene names: 22125544

Gene position: 1822792-1821509 (Counterclockwise)

Preceding gene: 22125550

Following gene: 22125543

Centisome position: 39.62

GC content: 51.25

Gene sequence:

>1284_bases
ATGTTGTTACATCTGAAAGGAAGCCACCGATTCATTAGCCTGATGCTCTGCGCATTATTACTCGCTGGCTGTGGACATCA
GCGGATGCCAGAGAAACCCGTGAGTCCGGTAGGGAAAGAAGAGCCGGTTCGTGGTGTCTGGCTAACCACCGTGCTCAGAC
TTGACTGGCCTTCACTTTCATCGATTAACGCTAGCTCAGACTCGATCAGGATCAGCACGCAAAAGAAAGAACTGACAGAC
ACATTAGATGACTTGGTGAAAAACGGCGTCAACACCCTTTTCTTTCAAGTAAAGCCTGATGGGAGCGCGCTTTATCATTC
AGCCATTCTTCCCTGGTCGGATGTTTTGACCGGTGTAACGGGTAAAGATCCCGGTTATGACCCTCTGGCCTTTGCGGTAT
CTGAAGCACATAAACGAGGGCTTAAGATACACGCGTGGCTGAACCCCTACCGTGTCTCAATGGATACCCGGCCGGAAACG
AGTGCATCACTTGAGCGCACGCTCTCTTCTTCGCCAGCCAGTGTCTACGCGCTGCATAAAGATTGGATACGCACCGCCAA
TGGCCGGTTTGTTCTCGATCCGGGGTTACCCGAGGTACGCCACTGGATCACCAATATTGTTGCCGAACTGGTCAAAAATT
ATGACATCGATGGCATACAGTTTGATGATTATTTCTATTATGAAACCCCGTCATCCCGGCTTGATGATGATGCCACATAC
CAGAAATATGGGCAGTCCTTCAGCGATAAGGCCAATTGGCGCAGGAACAATACGTTGTTGCTCATAAAACAGGTCTCTTC
AACCGTCAGGTCCCTTAAACCAGAGATTGAGTTTGGTGTCAGCCCGGCGGGCGTCTGGAGAAATCAGGCCGATGATCCCC
TAGGGTCAGAGACACAGGCAGGCAGCCCTTCTTACGATACCGCATATGCCGATACCCGTTTATGGGTGCAGGACGGTTTA
CTGGATTATATCGCACCACAACTCTACTGGACGCATAGCCAAAAAAAGGTCAAATATGACACGCTGGCAACATGGTGGGC
AGATACCGTCAGGCATAGCCACACCAAATTGTATATCGGCGTCGCGTTATACAAGGTTGGCCAACCCTCGCAGGCCGAAT
CTGACTGGGCACTGGAAGGCGGTGTGCCTGAGCTAAAGCGGCAACTGGATCTCAATGACGCGCTGCCGGAAATCAGCGGA
ACGATTCTGTTCAGGGAAGCGTTTCTCCGTCAGCCCCAGACGGAAGAGGCGGTAAAATATTTGAAGTCCAGGTGGCGTAA
CTGA

Upstream 100 bases:

>100_bases
AAGAACCTGCTCAGAGCTATATCCCAACGGCCTCTGAGCCACAATACCCGTTAAAGGGGATCAATAAATTCTGCATCCCC
CCGCATTTAAGGAATAGGTC

Downstream 100 bases:

>100_bases
AATCATAAAACGCAGCCATAGGCGGAGCCATTTTTAACCAAAAATTTGGCTCCCCACATGCATCGGTCTGTAAAAACAAT
ATTGATTAAAACCCAGTGTC

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MLLHLKGSHRFISLMLCALLLAGCGHQRMPEKPVSPVGKEEPVRGVWLTTVLRLDWPSLSSINASSDSIRISTQKKELTD
TLDDLVKNGVNTLFFQVKPDGSALYHSAILPWSDVLTGVTGKDPGYDPLAFAVSEAHKRGLKIHAWLNPYRVSMDTRPET
SASLERTLSSSPASVYALHKDWIRTANGRFVLDPGLPEVRHWITNIVAELVKNYDIDGIQFDDYFYYETPSSRLDDDATY
QKYGQSFSDKANWRRNNTLLLIKQVSSTVRSLKPEIEFGVSPAGVWRNQADDPLGSETQAGSPSYDTAYADTRLWVQDGL
LDYIAPQLYWTHSQKKVKYDTLATWWADTVRHSHTKLYIGVALYKVGQPSQAESDWALEGGVPELKRQLDLNDALPEISG
TILFREAFLRQPQTEEAVKYLKSRWRN

Sequences:

>Translated_427_residues
MLLHLKGSHRFISLMLCALLLAGCGHQRMPEKPVSPVGKEEPVRGVWLTTVLRLDWPSLSSINASSDSIRISTQKKELTD
TLDDLVKNGVNTLFFQVKPDGSALYHSAILPWSDVLTGVTGKDPGYDPLAFAVSEAHKRGLKIHAWLNPYRVSMDTRPET
SASLERTLSSSPASVYALHKDWIRTANGRFVLDPGLPEVRHWITNIVAELVKNYDIDGIQFDDYFYYETPSSRLDDDATY
QKYGQSFSDKANWRRNNTLLLIKQVSSTVRSLKPEIEFGVSPAGVWRNQADDPLGSETQAGSPSYDTAYADTRLWVQDGL
LDYIAPQLYWTHSQKKVKYDTLATWWADTVRHSHTKLYIGVALYKVGQPSQAESDWALEGGVPELKRQLDLNDALPEISG
TILFREAFLRQPQTEEAVKYLKSRWRN
>Mature_427_residues
MLLHLKGSHRFISLMLCALLLAGCGHQRMPEKPVSPVGKEEPVRGVWLTTVLRLDWPSLSSINASSDSIRISTQKKELTD
TLDDLVKNGVNTLFFQVKPDGSALYHSAILPWSDVLTGVTGKDPGYDPLAFAVSEAHKRGLKIHAWLNPYRVSMDTRPET
SASLERTLSSSPASVYALHKDWIRTANGRFVLDPGLPEVRHWITNIVAELVKNYDIDGIQFDDYFYYETPSSRLDDDATY
QKYGQSFSDKANWRRNNTLLLIKQVSSTVRSLKPEIEFGVSPAGVWRNQADDPLGSETQAGSPSYDTAYADTRLWVQDGL
LDYIAPQLYWTHSQKKVKYDTLATWWADTVRHSHTKLYIGVALYKVGQPSQAESDWALEGGVPELKRQLDLNDALPEISG
TILFREAFLRQPQTEEAVKYLKSRWRN

Specific function: Unknown

COG id: COG1649

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0748 family [H]

Homologues:

Organism=Escherichia coli, GI1787767, Length=393, Percent_Identity=61.8320610687023, Blast_Score=535, Evalue=1e-153,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003790
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02638 DUF187 [H]

EC number: NA

Molecular weight: Translated: 48230; Mature: 48230

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLHLKGSHRFISLMLCALLLAGCGHQRMPEKPVSPVGKEEPVRGVWLTTVLRLDWPSLS
CEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
SINASSDSIRISTQKKELTDTLDDLVKNGVNTLFFQVKPDGSALYHSAILPWSDVLTGVT
CCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCHHHHHCCCC
GKDPGYDPLAFAVSEAHKRGLKIHAWLNPYRVSMDTRPETSASLERTLSSSPASVYALHK
CCCCCCCHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEHH
DWIRTANGRFVLDPGLPEVRHWITNIVAELVKNYDIDGIQFDDYFYYETPSSRLDDDATY
HHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEECCEEEEECCCCCCCCCHHH
QKYGQSFSDKANWRRNNTLLLIKQVSSTVRSLKPEIEFGVSPAGVWRNQADDPLGSETQA
HHHCCCCCHHCCCCCCCEEEEEHHHHHHHHHCCCCHHCCCCCHHHCCCCCCCCCCCCCCC
GSPSYDTAYADTRLWVQDGLLDYIAPQLYWTHSQKKVKYDTLATWWADTVRHSHTKLYIG
CCCCCCCCCCCCCHHHHHCHHHHHCCHHEEECCCCEEEHHHHHHHHHHHHHCCCCEEEEE
VALYKVGQPSQAESDWALEGGVPELKRQLDLNDALPEISGTILFREAFLRQPQTEEAVKY
EEEEECCCCCCCCCCCCCCCCCHHHHHHCCCHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
LKSRWRN
HHHHCCC
>Mature Secondary Structure
MLLHLKGSHRFISLMLCALLLAGCGHQRMPEKPVSPVGKEEPVRGVWLTTVLRLDWPSLS
CEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
SINASSDSIRISTQKKELTDTLDDLVKNGVNTLFFQVKPDGSALYHSAILPWSDVLTGVT
CCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCHHHHHCCCC
GKDPGYDPLAFAVSEAHKRGLKIHAWLNPYRVSMDTRPETSASLERTLSSSPASVYALHK
CCCCCCCHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEHH
DWIRTANGRFVLDPGLPEVRHWITNIVAELVKNYDIDGIQFDDYFYYETPSSRLDDDATY
HHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEECCEEEEECCCCCCCCCHHH
QKYGQSFSDKANWRRNNTLLLIKQVSSTVRSLKPEIEFGVSPAGVWRNQADDPLGSETQA
HHHCCCCCHHCCCCCCCEEEEEHHHHHHHHHCCCCHHCCCCCHHHCCCCCCCCCCCCCCC
GSPSYDTAYADTRLWVQDGLLDYIAPQLYWTHSQKKVKYDTLATWWADTVRHSHTKLYIG
CCCCCCCCCCCCCHHHHHCHHHHHCCHHEEECCCCEEEHHHHHHHHHHHHHCCCCEEEEE
VALYKVGQPSQAESDWALEGGVPELKRQLDLNDALPEISGTILFREAFLRQPQTEEAVKY
EEEEECCCCCCCCCCCCCCCCCHHHHHHCCCHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
LKSRWRN
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]