Click here to switch to the map view.

The map label for this gene is yodB [H]

Identifier: 22125405

GI number: 22125405

Start: 1672693

End: 1673292

Strand: Direct

Name: yodB [H]

Synonym: y1510

Alternate gene names: 22125405

Gene position: 1672693-1673292 (Clockwise)

Preceding gene: 22125404

Following gene: 22125406

Centisome position: 36.36

GC content: 45.17

Gene sequence:

>600_bases
ATGTTCTTCATGTTGTTTTCATCGATTTGCGTCATATTGATTAAATTATTCTTATGCCGTCAACGGAGCATGGTTATGAA
AAATCGCTACTCTTTACCCCAAATAGTTCTGCATTGGTTAACTTTATTGATGATCATCTTGACCTATTTGGCCATGTTGC
TCAGCGATACGGTGCCCGATGAAGAGCGAACATTCGTGAGAAACCTGCATTTTAATTTTGGTATTTCTGTCTGGCTATTA
ATGTTAGTGCGGCTTTGGCTGCGGCAGAGAAACCCGACGCCAGCCATTTCGCCACCGTTGCCTCATTGGCAGTTATTGGG
TGTCCGTATTTCGCATTGGGGGTTGTATCTGATGTTCCTATCACTGCCGATTCTCGGGTTTTTGACTCAGGCTTATGGTG
GAAGAACTTGGTTACTGCTGGGCTGGCAAGTACCGCAGTGGCTCACGCCTAACACTGACGTGCGGGATTATCTTAAGCAA
ACCCATGTGTTCATTGCCAATTTAGGCTATTTCGTGATTGGGATACACGGTGTTGCGGCACTGTATCATCACTATATTCG
CCGCGATGATACTTTGCGCAGAATGATGCCTGGAAAATGA

Upstream 100 bases:

>100_bases
TCTATCACTAAAATGCAACTCTATCACCAAAATGCAACTCTATCACCAAAATGCAACTCTATCGCCATAATAGCAAATCG
CTCTGTGCGCTATTATTGCC

Downstream 100 bases:

>100_bases
TCCCAGGATCGGAGATGACAAAGGGCGTTGATGCGCTCCGAGGTTGAGGTTGATGACTGGGGGCCAGCGGCGGAGAGCAT
CGTCAGTAAGTCAATCAGAC

Product: cytochrome

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MFFMLFSSICVILIKLFLCRQRSMVMKNRYSLPQIVLHWLTLLMIILTYLAMLLSDTVPDEERTFVRNLHFNFGISVWLL
MLVRLWLRQRNPTPAISPPLPHWQLLGVRISHWGLYLMFLSLPILGFLTQAYGGRTWLLLGWQVPQWLTPNTDVRDYLKQ
THVFIANLGYFVIGIHGVAALYHHYIRRDDTLRRMMPGK

Sequences:

>Translated_199_residues
MFFMLFSSICVILIKLFLCRQRSMVMKNRYSLPQIVLHWLTLLMIILTYLAMLLSDTVPDEERTFVRNLHFNFGISVWLL
MLVRLWLRQRNPTPAISPPLPHWQLLGVRISHWGLYLMFLSLPILGFLTQAYGGRTWLLLGWQVPQWLTPNTDVRDYLKQ
THVFIANLGYFVIGIHGVAALYHHYIRRDDTLRRMMPGK
>Mature_199_residues
MFFMLFSSICVILIKLFLCRQRSMVMKNRYSLPQIVLHWLTLLMIILTYLAMLLSDTVPDEERTFVRNLHFNFGISVWLL
MLVRLWLRQRNPTPAISPPLPHWQLLGVRISHWGLYLMFLSLPILGFLTQAYGGRTWLLLGWQVPQWLTPNTDVRDYLKQ
THVFIANLGYFVIGIHGVAALYHHYIRRDDTLRRMMPGK

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=172, Percent_Identity=45.9302325581395, Blast_Score=163, Evalue=6e-42,
Organism=Escherichia coli, GI87081903, Length=174, Percent_Identity=41.3793103448276, Blast_Score=90, Evalue=9e-20,
Organism=Escherichia coli, GI1787296, Length=172, Percent_Identity=27.3255813953488, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 23527; Mature: 23527

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFMLFSSICVILIKLFLCRQRSMVMKNRYSLPQIVLHWLTLLMIILTYLAMLLSDTVPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EERTFVRNLHFNFGISVWLLMLVRLWLRQRNPTPAISPPLPHWQLLGVRISHWGLYLMFL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
SLPILGFLTQAYGGRTWLLLGWQVPQWLTPNTDVRDYLKQTHVFIANLGYFVIGIHGVAA
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYHHYIRRDDTLRRMMPGK
HHHHHHHCCHHHHHCCCCC
>Mature Secondary Structure
MFFMLFSSICVILIKLFLCRQRSMVMKNRYSLPQIVLHWLTLLMIILTYLAMLLSDTVPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EERTFVRNLHFNFGISVWLLMLVRLWLRQRNPTPAISPPLPHWQLLGVRISHWGLYLMFL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
SLPILGFLTQAYGGRTWLLLGWQVPQWLTPNTDVRDYLKQTHVFIANLGYFVIGIHGVAA
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYHHYIRRDDTLRRMMPGK
HHHHHHHCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]