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The map label for this gene is yliA [C]

Identifier: 22125136

GI number: 22125136

Start: 1384429

End: 1385133

Strand: Direct

Name: yliA [C]

Synonym: y1235

Alternate gene names: 22125136

Gene position: 1384429-1385133 (Clockwise)

Preceding gene: 22125135

Following gene: 22125138

Centisome position: 30.09

GC content: 48.94

Gene sequence:

>705_bases
TTGTCAGCAAGCCAATCCCACTGGCTGAGGTGGCCGACTATGCTTAGTGTCGAGAATCTGACCATCGTTCAAAGCGGAAA
GCGGCTATGGGAGTCGGTATCCTTCACTTTGGCACCAGGGGAACGATTAGGTATCTCAGCACCCAGTGGCTTTGGTAAAA
CGACGCTGGGCCGGGTATTAGCACAATGGCAGTCGGCAACTGCGGGTCATATCCTGTTAGAGGGGAAACCATTAGCTAAA
AAAGGATATTGTCCGGTCCAACTGGTTCCTCAGCACCCAGAGCAAAGTTTTAATCCTTATCGCACCACCGGTGAGAGCCT
ACATGATGCCTGGCGGCCCGATGCTGATTGGTTGGCGCGGATGGCGGTTAATCCTGATTGGCTGCAACGCAGGCCGGATG
AATTATCGGGTGGTGAATTGGCCCGCATTGCTTTGTTACGCGCGCTGGATCCACGGACGCGTTATTTGATTGCGGATGAG
GTTACCGCACAATTAGACGCCCGTATTCAGGCTCAAATTTGGCAAGTTTTATTGGAAGAAGCTGAACACCGTCGATTAGG
GCTCATTGTTTTTAGCCATAATAAGGCATTATTAGAAAAAGTGTGTTCACGTATTTGGATCCCTGAAAGAGAAAGTAAAA
CTACAATTTATCCAACGCCATTGGTTAAACCCCATTTGGGGTTAGCAATGGTAAAAACGGGTTAA

Upstream 100 bases:

>100_bases
AAAGGTGAGTTGCACGAAACATTGAGCGCTGACGAACTGAAAAATAGCGGTGGTAGCCCATGGTTGCAGTCACTCTGGGC
CGCATTACCGGAACAGCAAT

Downstream 100 bases:

>100_bases
TGGTAAAAACAGGTTGATGCTAAAAATAGGTTAATACTAAAAAGAACCGTGGAATGCGATTAAATTAAATATCACAGCTA
GAATAATAACTAATAGTGAT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MSASQSHWLRWPTMLSVENLTIVQSGKRLWESVSFTLAPGERLGISAPSGFGKTTLGRVLAQWQSATAGHILLEGKPLAK
KGYCPVQLVPQHPEQSFNPYRTTGESLHDAWRPDADWLARMAVNPDWLQRRPDELSGGELARIALLRALDPRTRYLIADE
VTAQLDARIQAQIWQVLLEEAEHRRLGLIVFSHNKALLEKVCSRIWIPERESKTTIYPTPLVKPHLGLAMVKTG

Sequences:

>Translated_234_residues
MSASQSHWLRWPTMLSVENLTIVQSGKRLWESVSFTLAPGERLGISAPSGFGKTTLGRVLAQWQSATAGHILLEGKPLAK
KGYCPVQLVPQHPEQSFNPYRTTGESLHDAWRPDADWLARMAVNPDWLQRRPDELSGGELARIALLRALDPRTRYLIADE
VTAQLDARIQAQIWQVLLEEAEHRRLGLIVFSHNKALLEKVCSRIWIPERESKTTIYPTPLVKPHLGLAMVKTG
>Mature_233_residues
SASQSHWLRWPTMLSVENLTIVQSGKRLWESVSFTLAPGERLGISAPSGFGKTTLGRVLAQWQSATAGHILLEGKPLAKK
GYCPVQLVPQHPEQSFNPYRTTGESLHDAWRPDADWLARMAVNPDWLQRRPDELSGGELARIALLRALDPRTRYLIADEV
TAQLDARIQAQIWQVLLEEAEHRRLGLIVFSHNKALLEKVCSRIWIPERESKTTIYPTPLVKPHLGLAMVKTG

Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]

COG id: COG1124

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9665248, Length=188, Percent_Identity=29.7872340425532, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI145693107, Length=198, Percent_Identity=31.8181818181818, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789891, Length=200, Percent_Identity=32, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787500, Length=199, Percent_Identity=30.6532663316583, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1788506, Length=226, Percent_Identity=29.646017699115, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789962, Length=218, Percent_Identity=26.605504587156, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787547, Length=240, Percent_Identity=25.8333333333333, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787758, Length=189, Percent_Identity=30.6878306878307, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081791, Length=209, Percent_Identity=27.7511961722488, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1786698, Length=199, Percent_Identity=26.6331658291457, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787029, Length=227, Percent_Identity=25.1101321585903, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789890, Length=249, Percent_Identity=26.9076305220884, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI48994883, Length=202, Percent_Identity=27.2277227722772, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789963, Length=207, Percent_Identity=28.0193236714976, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48994997, Length=214, Percent_Identity=25.2336448598131, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787759, Length=205, Percent_Identity=25.8536585365854, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788225, Length=215, Percent_Identity=26.5116279069767, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 26324; Mature: 26192

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASQSHWLRWPTMLSVENLTIVQSGKRLWESVSFTLAPGERLGISAPSGFGKTTLGRVL
CCCCCCCEEECCCEEEECCEEEEHHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHHHHHH
AQWQSATAGHILLEGKPLAKKGYCPVQLVPQHPEQSFNPYRTTGESLHDAWRPDADWLAR
HHHHCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHH
MAVNPDWLQRRPDELSGGELARIALLRALDPRTRYLIADEVTAQLDARIQAQIWQVLLEE
HCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
AEHRRLGLIVFSHNKALLEKVCSRIWIPERESKTTIYPTPLVKPHLGLAMVKTG
HCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEECC
>Mature Secondary Structure 
SASQSHWLRWPTMLSVENLTIVQSGKRLWESVSFTLAPGERLGISAPSGFGKTTLGRVL
CCCCCCEEECCCEEEECCEEEEHHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHHHHHH
AQWQSATAGHILLEGKPLAKKGYCPVQLVPQHPEQSFNPYRTTGESLHDAWRPDADWLAR
HHHHCCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHH
MAVNPDWLQRRPDELSGGELARIALLRALDPRTRYLIADEVTAQLDARIQAQIWQVLLEE
HCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
AEHRRLGLIVFSHNKALLEKVCSRIWIPERESKTTIYPTPLVKPHLGLAMVKTG
HCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424 [H]