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The map label for this gene is ycfD [H]

Identifier: 22125037

GI number: 22125037

Start: 1272739

End: 1273047

Strand: Direct

Name: ycfD [H]

Synonym: y1133

Alternate gene names: 22125037

Gene position: 1272739-1273047 (Clockwise)

Preceding gene: 22125036

Following gene: 22125039

Centisome position: 27.66

GC content: 50.81

Gene sequence:

>309_bases
GTGACGACACCACGCCATGAACTGGATATCGCCCCCGCACAGCCGCCCTATGATCAGGATGAGATTGTTGATGCCCTGAT
GGAGGGCGCTGTATTGACGCGCTTAGGTGGGTTGCGAGTTCTGCGTGTTGGCGACAACGTTTTCATTAACAGCGAACGGT
TGGAAATGGCCAATGCTGAAGCCGCTGATGCTCTGTGCCGTTACACCATTATTGGCAAAAAAGAGTTGGGCGAGGCACTA
CAGGATTCGGCTTTCGTCACGGAATTAACCGAATTGATTAATCAGGGCTATTGGTTCTTCAACGAATAA

Upstream 100 bases:

>100_bases
CCGCCTGAGCGATCACCTTTAATACGGTGGCAGTTACACAGAATTATGGACAGGCTCGATTAATCAGCCGGAAGATTTTA
AACAGTGGTTTGGCCGCTTC

Downstream 100 bases:

>100_bases
TAGCGCTATATACCCTAAATAATGGGTGACAGGTTGTGTAATCCCTGCATTAATTCATCGGCATGCTCAAAGCTGATCGC
TTTCGGTACATCGACCAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 101

Protein sequence:

>102_residues
MTTPRHELDIAPAQPPYDQDEIVDALMEGAVLTRLGGLRVLRVGDNVFINSERLEMANAEAADALCRYTIIGKKELGEAL
QDSAFVTELTELINQGYWFFNE

Sequences:

>Translated_102_residues
MTTPRHELDIAPAQPPYDQDEIVDALMEGAVLTRLGGLRVLRVGDNVFINSERLEMANAEAADALCRYTIIGKKELGEAL
QDSAFVTELTELINQGYWFFNE
>Mature_101_residues
TTPRHELDIAPAQPPYDQDEIVDALMEGAVLTRLGGLRVLRVGDNVFINSERLEMANAEAADALCRYTIIGKKELGEALQ
DSAFVTELTELINQGYWFFNE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=100, Percent_Identity=51, Blast_Score=113, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 11401; Mature: 11270

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPRHELDIAPAQPPYDQDEIVDALMEGAVLTRLGGLRVLRVGDNVFINSERLEMANAE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCHHHHHCCCH
AADALCRYTIIGKKELGEALQDSAFVTELTELINQGYWFFNE
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure 
TTPRHELDIAPAQPPYDQDEIVDALMEGAVLTRLGGLRVLRVGDNVFINSERLEMANAE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCHHHHHCCCH
AADALCRYTIIGKKELGEALQDSAFVTELTELINQGYWFFNE
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]