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The map label for this gene is ygaD [C]

Identifier: 22124790

GI number: 22124790

Start: 989595

End: 990212

Strand: Direct

Name: ygaD [C]

Synonym: y0880

Alternate gene names: 22124790

Gene position: 989595-990212 (Clockwise)

Preceding gene: 22124787

Following gene: 22124791

Centisome position: 21.51

GC content: 47.9

Gene sequence:

>618_bases
TTGTACGGGAAAGTACTTATTTTCATTACATGCTGCGAGACGTTTCGCATAACTGAGTGTGGTTGCTATCGCAGGCTAAA
GAAGTGCTACTATCGGCAGCAAGAAATTTATTTAGAATGGGGGGCAACAATGAGCGAAGGACAACTACGTCAACTCAGTA
TTGCGGTTGGGCATAAGTTAAAAGAACACGGTGCGTGGGTGACCTGTGCAGAATCTTGTACTGGGGGGTGGGTAGCCAAA
GCCCTGACGGATATTGCTGGCAGTTCTGCTTATTTTGACCGCGGTTTTGTCACCTACAGCAATGCGGCAAAGCAAGATCT
ATTGGGCGTATCTGAAACGACCTTAGCGCGTTATGGTGCGGTGAGTGAGGCCGTGGTACGTGAAATGGCATTGGGGGCAT
TGAAACAAGCCAATGCAGACTTTGCCGTTTCCATTAGTGGTATTGCGGGGCCTGATGGTGGCAGCGCAGATAAACCGGTA
GGCACTGTCTGGTTTGGTTTTATCTCACGCGAAGGGCCGATTAGTGCAAGAAAAAAACACTTTTCTGGTGATCGTGACTC
AGTACGGTTGCAAGCAGCTGTTTTCGCACTACAAACACTATTCGATGATTTTCTGTAA

Upstream 100 bases:

>100_bases
TCATGATTTTTTATCCCCTTTTAAAAAGGGGTTTTCTCCCCTCTCACCGCTATTCGCTCGGCTCTTTTGATACTAACAGC
TAAGCCCCACAGGTAAAGCT

Downstream 100 bases:

>100_bases
AAATAGGCTTGATACTGTATGATTGTACAGTATAATTAGCGGTAATTTCTTGTACAAAATAACATTCAGTGGCGATGGTA
GGGGGAACCCTGGCATACCA

Product: competence damage-inducible protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MYGKVLIFITCCETFRITECGCYRRLKKCYYRQQEIYLEWGATMSEGQLRQLSIAVGHKLKEHGAWVTCAESCTGGWVAK
ALTDIAGSSAYFDRGFVTYSNAAKQDLLGVSETTLARYGAVSEAVVREMALGALKQANADFAVSISGIAGPDGGSADKPV
GTVWFGFISREGPISARKKHFSGDRDSVRLQAAVFALQTLFDDFL

Sequences:

>Translated_205_residues
MYGKVLIFITCCETFRITECGCYRRLKKCYYRQQEIYLEWGATMSEGQLRQLSIAVGHKLKEHGAWVTCAESCTGGWVAK
ALTDIAGSSAYFDRGFVTYSNAAKQDLLGVSETTLARYGAVSEAVVREMALGALKQANADFAVSISGIAGPDGGSADKPV
GTVWFGFISREGPISARKKHFSGDRDSVRLQAAVFALQTLFDDFL
>Mature_205_residues
MYGKVLIFITCCETFRITECGCYRRLKKCYYRQQEIYLEWGATMSEGQLRQLSIAVGHKLKEHGAWVTCAESCTGGWVAK
ALTDIAGSSAYFDRGFVTYSNAAKQDLLGVSETTLARYGAVSEAVVREMALGALKQANADFAVSISGIAGPDGGSADKPV
GTVWFGFISREGPISARKKHFSGDRDSVRLQAAVFALQTLFDDFL

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=162, Percent_Identity=66.6666666666667, Blast_Score=214, Evalue=3e-57,
Organism=Escherichia coli, GI1787818, Length=147, Percent_Identity=40.1360544217687, Blast_Score=106, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 22368; Mature: 22368

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYGKVLIFITCCETFRITECGCYRRLKKCYYRQQEIYLEWGATMSEGQLRQLSIAVGHKL
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHH
KEHGAWVTCAESCTGGWVAKALTDIAGSSAYFDRGFVTYSNAAKQDLLGVSETTLARYGA
HHCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHCCCCHHHHHHHCC
VSEAVVREMALGALKQANADFAVSISGIAGPDGGSADKPVGTVWFGFISREGPISARKKH
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHEEEECCCCCCCHHHHHH
FSGDRDSVRLQAAVFALQTLFDDFL
CCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYGKVLIFITCCETFRITECGCYRRLKKCYYRQQEIYLEWGATMSEGQLRQLSIAVGHKL
CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHH
KEHGAWVTCAESCTGGWVAKALTDIAGSSAYFDRGFVTYSNAAKQDLLGVSETTLARYGA
HHCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHCCCCHHHHHHHCC
VSEAVVREMALGALKQANADFAVSISGIAGPDGGSADKPVGTVWFGFISREGPISARKKH
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHEEEECCCCCCCHHHHHH
FSGDRDSVRLQAAVFALQTLFDDFL
CCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA