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The map label for this gene is yjdC [H]

Identifier: 22124512

GI number: 22124512

Start: 675124

End: 675714

Strand: Reverse

Name: yjdC [H]

Synonym: y0598

Alternate gene names: 22124512

Gene position: 675714-675124 (Counterclockwise)

Preceding gene: 22124516

Following gene: 22124510

Centisome position: 14.69

GC content: 49.75

Gene sequence:

>591_bases
TTGGAGGAGAGTAACGTGCAACGTGAACAAGTTTTAAGTAACGCACTCAATCTGTTAGAACAGCAAGGGTTGGCAAATAC
CACGCTAGAAATGCTCGCCAAAGCGCTGTCAGTTGAAGTCAGTGACCTGACACGCTTTTGGCCAGATCGTGAGGCATTGC
TCTACGATTGCCTGCGCTATCACAGCCAACAGATTGATACCTGGCGGCGGCAGCTACAGCTGGACGAGACCCTATCACCG
CAGCAAAAGCTACTGGCACGCTATCAAACACTGAGCGAGCAAGTGCAAAACCAGCGCTACCCCGGCTGCTTGTTTATTGC
TGCCTGCAGTTTCTATCCTGATACTGAGCACCCTATTCACCAATTGGCTGAACAGCAGAAACAGGCCTCGCTGCACTATA
CAAAAGCCTTGCTGCAAGAGATGGATGCTGACGATGCCGATATGGTCGCACAGCAGATGGAGTTGATTCTGGAGGGTTGC
CTGAGCAAATTACTGATTAAGCGTCAGTTGGCAGATGTTGAGGTTGCCAAATGTTTAGCGGAAGACATATTAACAGTGGC
CCAATGCCGTAAAAATGGTGCCTTAAGCTGA

Upstream 100 bases:

>100_bases
GTCAACCGACAACGGGGTGCCCGTAAAGATAGGGCTATTGGCAAAAAATGGATCATTTGCAGAATAAGCAGCGGTCAACC
ACACTTGCCAGATAAAGAGG

Downstream 100 bases:

>100_bases
GTCTTTCTAGCGTAAACTTTACGGCAAGCGCCGGGCGATTTTTCCTACTTTTGCCTGAAAAGAGAGCGATCAACATAGTT
TTAGCGGTTTTAGGTTATAA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MEESNVQREQVLSNALNLLEQQGLANTTLEMLAKALSVEVSDLTRFWPDREALLYDCLRYHSQQIDTWRRQLQLDETLSP
QQKLLARYQTLSEQVQNQRYPGCLFIAACSFYPDTEHPIHQLAEQQKQASLHYTKALLQEMDADDADMVAQQMELILEGC
LSKLLIKRQLADVEVAKCLAEDILTVAQCRKNGALS

Sequences:

>Translated_196_residues
MEESNVQREQVLSNALNLLEQQGLANTTLEMLAKALSVEVSDLTRFWPDREALLYDCLRYHSQQIDTWRRQLQLDETLSP
QQKLLARYQTLSEQVQNQRYPGCLFIAACSFYPDTEHPIHQLAEQQKQASLHYTKALLQEMDADDADMVAQQMELILEGC
LSKLLIKRQLADVEVAKCLAEDILTVAQCRKNGALS
>Mature_196_residues
MEESNVQREQVLSNALNLLEQQGLANTTLEMLAKALSVEVSDLTRFWPDREALLYDCLRYHSQQIDTWRRQLQLDETLSP
QQKLLARYQTLSEQVQNQRYPGCLFIAACSFYPDTEHPIHQLAEQQKQASLHYTKALLQEMDADDADMVAQQMELILEGC
LSKLLIKRQLADVEVAKCLAEDILTVAQCRKNGALS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082374, Length=191, Percent_Identity=64.3979057591623, Blast_Score=257, Evalue=4e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22425; Mature: 22425

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEESNVQREQVLSNALNLLEQQGLANTTLEMLAKALSVEVSDLTRFWPDREALLYDCLRY
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
HSQQIDTWRRQLQLDETLSPQQKLLARYQTLSEQVQNQRYPGCLFIAACSFYPDTEHPIH
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHH
QLAEQQKQASLHYTKALLQEMDADDADMVAQQMELILEGCLSKLLIKRQLADVEVAKCLA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDILTVAQCRKNGALS
HHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEESNVQREQVLSNALNLLEQQGLANTTLEMLAKALSVEVSDLTRFWPDREALLYDCLRY
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
HSQQIDTWRRQLQLDETLSPQQKLLARYQTLSEQVQNQRYPGCLFIAACSFYPDTEHPIH
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHH
QLAEQQKQASLHYTKALLQEMDADDADMVAQQMELILEGCLSKLLIKRQLADVEVAKCLA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EDILTVAQCRKNGALS
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]