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The map label for this gene is rarD [H]

Identifier: 22124309

GI number: 22124309

Start: 440638

End: 441597

Strand: Reverse

Name: rarD [H]

Synonym: y0394

Alternate gene names: 22124309

Gene position: 441597-440638 (Counterclockwise)

Preceding gene: 22124310

Following gene: 22124305

Centisome position: 9.6

GC content: 51.56

Gene sequence:

>960_bases
GTGATTCGCCACGCAAAGTTAAGTACACTAACCGCATCTCCTTTCTTGTATTCTGTACCGAGCCACTCCATGGATAAACA
ACAAACTCGTCAGGGCATTTTTTTTGCTCTGGCTGCCTATTTTATTTGGGGCCTTGCTCCCGCGTATTTCAAACTCATCC
AACAAGTGCCCGCTGATGAGATTCTGACCCACAGGGTCATCTGGTCATTCTTCTTTATGTTGATTCTGCTTACCGTCAGC
CGCCATTGGCCACAGGTGCGCGACGCCTGCAAAAACCGTAAGCGCCTATTGTTACTGGCGGTGACCGCCGTTTTGATTGC
CAGTAACTGGCTGCTGTTTATCTGGGCGGTCAACCACAATCACATGCTGGAAGCCAGTCTGGGATATTTCATTAATCCGT
TGGTCAATGTGCTGTTTGGCATGTTATTTCTCGGCGAACGCTTTCGTCGTATGCAATGGGTCGCCGTGGCACTCGCCTTT
GCCGGCGTGCTGATTCAACTGTGGCAATTTGGTTCACTGCCAGTGATTGGGCTGGGTCTGGCCATCACCTTTGCTTTATA
CGGCTTGTTGCGTAAAAAGCTGGGCGTTGATGCCCAAACCGGTATGCTCATTGAAACCATGTGGCTGCTACCAGTAGCCG
CCGTATATCTGTTTTTCATCGCCGACAGCCCGACCAGCCACCTGAGCGCCAATGCCTGGTCGCTGAACCTGCTGCTAGCC
GCTGCGGGCGTCATTACCACAATCCCACTGCTGTTCTTCACCGCGGCGGCCACCCGTTTGCGTCTTTCGACACTGGGTTT
CTTCCAGTATCTTGGGCCAACATTGATGTTTATTTTGGCGGTGACGTTCTACGGTGAAACCATTGGTAATGACAAGATGG
TGACCTTCATCTTTATCTGGGCGGCCCTGCTACTGTTTACGCTGGATGCACTCTATACCCAACGCAAACTACGCCGGTAA

Upstream 100 bases:

>100_bases
AAGTGGCTGTCGCCCGGGTTGAACTGCATAATGAAAAACAAATTCATATCGCCAGCGCGACGGCGACCTATCTGGTTGGC
TAATTTAACCTACTGCGTGG

Downstream 100 bases:

>100_bases
GATGCCGAAAAAAAGCCCGGTTACTCAATATTGGGGTTAGTCCAATTGAGTGACCGGGCTTTTTTATTCGTTGCTGGATA
TTTTTATCAATACAACCCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MIRHAKLSTLTASPFLYSVPSHSMDKQQTRQGIFFALAAYFIWGLAPAYFKLIQQVPADEILTHRVIWSFFFMLILLTVS
RHWPQVRDACKNRKRLLLLAVTAVLIASNWLLFIWAVNHNHMLEASLGYFINPLVNVLFGMLFLGERFRRMQWVAVALAF
AGVLIQLWQFGSLPVIGLGLAITFALYGLLRKKLGVDAQTGMLIETMWLLPVAAVYLFFIADSPTSHLSANAWSLNLLLA
AAGVITTIPLLFFTAAATRLRLSTLGFFQYLGPTLMFILAVTFYGETIGNDKMVTFIFIWAALLLFTLDALYTQRKLRR

Sequences:

>Translated_319_residues
MIRHAKLSTLTASPFLYSVPSHSMDKQQTRQGIFFALAAYFIWGLAPAYFKLIQQVPADEILTHRVIWSFFFMLILLTVS
RHWPQVRDACKNRKRLLLLAVTAVLIASNWLLFIWAVNHNHMLEASLGYFINPLVNVLFGMLFLGERFRRMQWVAVALAF
AGVLIQLWQFGSLPVIGLGLAITFALYGLLRKKLGVDAQTGMLIETMWLLPVAAVYLFFIADSPTSHLSANAWSLNLLLA
AAGVITTIPLLFFTAAATRLRLSTLGFFQYLGPTLMFILAVTFYGETIGNDKMVTFIFIWAALLLFTLDALYTQRKLRR
>Mature_319_residues
MIRHAKLSTLTASPFLYSVPSHSMDKQQTRQGIFFALAAYFIWGLAPAYFKLIQQVPADEILTHRVIWSFFFMLILLTVS
RHWPQVRDACKNRKRLLLLAVTAVLIASNWLLFIWAVNHNHMLEASLGYFINPLVNVLFGMLFLGERFRRMQWVAVALAF
AGVLIQLWQFGSLPVIGLGLAITFALYGLLRKKLGVDAQTGMLIETMWLLPVAAVYLFFIADSPTSHLSANAWSLNLLLA
AAGVITTIPLLFFTAAATRLRLSTLGFFQYLGPTLMFILAVTFYGETIGNDKMVTFIFIWAALLLFTLDALYTQRKLRR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=296, Percent_Identity=71.9594594594595, Blast_Score=450, Evalue=1e-128,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 36089; Mature: 36089

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRHAKLSTLTASPFLYSVPSHSMDKQQTRQGIFFALAAYFIWGLAPAYFKLIQQVPADE
CCCCCHHHHEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ILTHRVIWSFFFMLILLTVSRHWPQVRDACKNRKRLLLLAVTAVLIASNWLLFIWAVNHN
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
HMLEASLGYFINPLVNVLFGMLFLGERFRRMQWVAVALAFAGVLIQLWQFGSLPVIGLGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AITFALYGLLRKKLGVDAQTGMLIETMWLLPVAAVYLFFIADSPTSHLSANAWSLNLLLA
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
AAGVITTIPLLFFTAAATRLRLSTLGFFQYLGPTLMFILAVTFYGETIGNDKMVTFIFIW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
AALLLFTLDALYTQRKLRR
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIRHAKLSTLTASPFLYSVPSHSMDKQQTRQGIFFALAAYFIWGLAPAYFKLIQQVPADE
CCCCCHHHHEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ILTHRVIWSFFFMLILLTVSRHWPQVRDACKNRKRLLLLAVTAVLIASNWLLFIWAVNHN
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
HMLEASLGYFINPLVNVLFGMLFLGERFRRMQWVAVALAFAGVLIQLWQFGSLPVIGLGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
AITFALYGLLRKKLGVDAQTGMLIETMWLLPVAAVYLFFIADSPTSHLSANAWSLNLLLA
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
AAGVITTIPLLFFTAAATRLRLSTLGFFQYLGPTLMFILAVTFYGETIGNDKMVTFIFIW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
AALLLFTLDALYTQRKLRR
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503 [H]