| Definition | Yersinia pestis KIM 10 chromosome, complete genome. |
|---|---|
| Accession | NC_004088 |
| Length | 4,600,755 |
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The map label for this gene is tccC1 [C]
Identifier: 22124110
GI number: 22124110
Start: 198944
End: 201775
Strand: Direct
Name: tccC1 [C]
Synonym: y0190
Alternate gene names: 22124110
Gene position: 198944-201775 (Clockwise)
Preceding gene: 22124109
Following gene: 22124111
Centisome position: 4.32
GC content: 48.2
Gene sequence:
>2832_bases ATGCCCAATATATTACCCACTGATCTGTGCGCCAACACCCCCACCCTCGCCATCCACGATAACCGGGGGTTCGCTATTCG CACACTGGCTTATAACCGCCGCGATCATAATGAAACCATTGGCGAACTGATCAGCCGCAACCGCTATAACGCCTCCGGTC AGCTAATCGCCAGCCGCGACCCGCGCCTTGAGGTGGATAATTTCCGCTATCAATACAGCCTCAGCGGTGTTCCACTGCGC ACCGACAGCGTCGATAGCGGCAGTACACTGCAACTGGCAGATAGTGCTGGCCGCACGGTGCTCACGCTCGATGCACACCA CACCCGCCGCTGGGTGGAGTATGAGACCGGTGAACACAGTTTAGGCCGCCCGCTAAGTTACCACGAGCAAGCCAAAGGCG GCCTGAAAACAGTTACCGACCGCTTTTTCTATGCCACAAACAGCGAGCAGGATAAAAGCGGCAATCTGAACGGCCAGTGT GTACGCCATTACGACAGCGCCGGTTTGCAGGCACTGATTAACCAGTCGATTATTGGCGTACCACTGCAACAACAGCGCCG TCTACTGACGAATCCCAAAGGCCCAGTTGACTGGTTTGGCGAAAAGGAAAACTGGGGCGCTCGCCTGAGCGAACAGCCGT TTGTTAGCCATAGCACCACCGATGCTCTCGGCCAGTTACTCACGCAAACCGATGCCAAAGGCCATATCCAGCGCATGGCC TATAACCGCGCCGGACAACTTATCGGTTCGTGGCTAACAATAAAAAATAGCGCTGAACAGGTGATCCTCCGTTCACTCAC CTATTCGGCTGCTGGGCAAAAACTGCGCGAAGAGAGCGGCAACGGGGTGATTACCGAATACCGTTATGAACCCCAGACTC AGCGCTTAATCGGCATTAAAACCACCCGCCCGGCGAAGAAAGACCGCCCGACCCGGTTACAAGACCTGCGTTACGATTAT GACCCGGTCGGGAATATTCTCGCCATCCATAATGACGCCGAAGCCACCCGCTTCTACCGTAATCAGAAAATCGTGCCGGA AACCACTTACCGCTACGATGCACTGTATCAGCTTATCGAGGCCACCGGCCGTGAAGCGGATACCAACGGCATACAAAACA GCCAGTTACCCGCACTGGCGTCACTGAACGACAGCAACCAGTTCGTCAACTACACCCGCAGCTACCACTATGACCGCGCC GGTAATCTGCTGAAAATACAGCATACCGGTGCCAGCCAATACAGTACCCATATCACGGTGTCCGATTCGTCCAATCACGG CATTCAGCAACAAGAGGGTATCACCGCCCGTGATATTCGCTCCCAGTTTGATGCGGCGGGTAATCAGCAACAACTGCAAC CCGGTCAGCCCCTGCGCTGGAACAGCCGCAATCAGTTACAGCAGGTGGAACCCGTGCCCCGCAACGATGGCATCAGTGAC AGCGAAAGTTATCTCTATGATGGTGGCGGTAGCCGGGTGGTCAAAACCAGTCTCCATAAAACCCATAACGCCATCCAAAC CCGTTCAGTCATTTATTTAGCGGGACTGGAACTGCGTAGCCAATATAATGGCAATAATCTGACAGAAGATTTTCAGGTGA TAACCGTGGGTGCCGCGGGCCGTGCTCAGGTACGGGTATTACACTGGGAGCGCGGCCAACCCGTTGATATCGTCAATGAC CAACTGCGTTACAGTTTCGATAATCACCTTGGCTCGGCGTTAATCGAATTAGACAGCGATGGCGATATTATCAGCCAGGA AGAATATTACCCATTTGGCGGTACCGCGGTGTTAGCCTCCCGCAATACCGTGGAAGCCAAATATAAAACCGTTCGTTACT CCGGTAAAGAGCGTGACGCCACCGGGCTGTATTATTATGGTTACCGTTATTACCAGCCGTGGCTGGGCCGCTGGTTAAGC GCTGACCCCGCAGGCACTATAGACGGACTGAATTTATATCGGATGGTGAGGAATAATCCGGTGGGGTTGATGGATGGGGA TGGGTTAATGACCGATAAGCTTCTTGCTAAACATGAAGCAAATTTTGCAAAAAAAAACATATCATCTATGGCTGAATTAA AATCAGAAATAGAAAAACTCGGTCTGCTCCCTGCTGATAGTAAGCAATTATTCTTGCATTTAAATGGTGGTGAATCTGAC GATGAACCCTCTGGTTCTTCCGGTTCTTCCGGTTCTTCTGAAATATTAGAGAATACTTCACCCCACAAAATAAAAAACTT CCATTTCATTAGCGAAATAAATCTAGCCACCATGCCCAGACCTTATTATAAAGACTTTTCCAGCACAGAGGATATGTTGG AGTCTGCAGAGAGACTTAAAGCATATGGTTCAATAGATACGCTGTTGACACTAGATTTAACCAGTGAAGATATTCCTGAA TTTACGTCAATATTAGCCGATAAAGGAATAAATTATATAGCAGAAAAACAATATGAAATAATTGATTACTTTAGCGAAGA TGAATTATCCTCAGAAAATATAGACCGTATCGTCAACATGATAAAAACAATTCAAAATAACAACCACAAAGTAGGTATAC ATTGCGCAGCAGGAAATGGCCGCAGTGGACTTATTGCCACCGCCATGATAATAAACAAAAAATACACACAAAGTCGTATA AATAGCTTTGAAGAAAAAAACAAATTAAAGGAAATAATTGATAAGAATAAAAATGAAATAAATGTTGATGCTATTACTTA TGATGCAATGAAATTAGTAAGGAAAACAAATCCCTTTGCCGGAGAGCGAACAACTGACATAAAAGCAGCACGTGAATACT CACGTTATTTATATAGCAAACAGAATCGATAA
Upstream 100 bases:
>100_bases CTGGCGATGGTGCGCTGTAATGCTAACCGGGAGTCAGCGTTACGCTTTTTGCAACGATAGATTTCACAACCGTAAAATAA CTCGTTTAAGGAATAATTTT
Downstream 100 bases:
>100_bases TTAAGAATATTAAGGAGCCATTTTATGTCCACAAGTTTACCAACCCAGCTTTGCGCCAACACCCCCGCCCTCACCATCCA CGATAACCGGGGGTTAGCTA
Product: toxin subunit
Products: NA
Alternate protein names: Insecticidal xin Complex; Insecticidal xin Protein; Insecticidal xin Complex Protein; C Component Of Insecticidal xin Complex; YD Repeat Protein; Rhs Family Protein-Like Protein; Insecticidal xin; Zinc Finger C2H2-Type Domain-Containing Protein; FG-GAP Repeat Protein; Insecticidal xin SepC/Tcc Class; Insecticidal xin SepC/TccC; Rhs Family Protein; Insecticial xin; Insecticidal xin Complex Protein TcaC; Insecticidal xin Complex TccC; Insecticidal xin Complex-Like Protein; Insecticial xin Complex; Insecticidal xin Complex Protein Tccc
Number of amino acids: Translated: 943; Mature: 942
Protein sequence:
>943_residues MPNILPTDLCANTPTLAIHDNRGFAIRTLAYNRRDHNETIGELISRNRYNASGQLIASRDPRLEVDNFRYQYSLSGVPLR TDSVDSGSTLQLADSAGRTVLTLDAHHTRRWVEYETGEHSLGRPLSYHEQAKGGLKTVTDRFFYATNSEQDKSGNLNGQC VRHYDSAGLQALINQSIIGVPLQQQRRLLTNPKGPVDWFGEKENWGARLSEQPFVSHSTTDALGQLLTQTDAKGHIQRMA YNRAGQLIGSWLTIKNSAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPTRLQDLRYDY DPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPALASLNDSNQFVNYTRSYHYDRA GNLLKIQHTGASQYSTHITVSDSSNHGIQQQEGITARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISD SESYLYDGGGSRVVKTSLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVITVGAAGRAQVRVLHWERGQPVDIVND QLRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLASRNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLS ADPAGTIDGLNLYRMVRNNPVGLMDGDGLMTDKLLAKHEANFAKKNISSMAELKSEIEKLGLLPADSKQLFLHLNGGESD DEPSGSSGSSGSSEILENTSPHKIKNFHFISEINLATMPRPYYKDFSSTEDMLESAERLKAYGSIDTLLTLDLTSEDIPE FTSILADKGINYIAEKQYEIIDYFSEDELSSENIDRIVNMIKTIQNNNHKVGIHCAAGNGRSGLIATAMIINKKYTQSRI NSFEEKNKLKEIIDKNKNEINVDAITYDAMKLVRKTNPFAGERTTDIKAAREYSRYLYSKQNR
Sequences:
>Translated_943_residues MPNILPTDLCANTPTLAIHDNRGFAIRTLAYNRRDHNETIGELISRNRYNASGQLIASRDPRLEVDNFRYQYSLSGVPLR TDSVDSGSTLQLADSAGRTVLTLDAHHTRRWVEYETGEHSLGRPLSYHEQAKGGLKTVTDRFFYATNSEQDKSGNLNGQC VRHYDSAGLQALINQSIIGVPLQQQRRLLTNPKGPVDWFGEKENWGARLSEQPFVSHSTTDALGQLLTQTDAKGHIQRMA YNRAGQLIGSWLTIKNSAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPTRLQDLRYDY DPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPALASLNDSNQFVNYTRSYHYDRA GNLLKIQHTGASQYSTHITVSDSSNHGIQQQEGITARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISD SESYLYDGGGSRVVKTSLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVITVGAAGRAQVRVLHWERGQPVDIVND QLRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLASRNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLS ADPAGTIDGLNLYRMVRNNPVGLMDGDGLMTDKLLAKHEANFAKKNISSMAELKSEIEKLGLLPADSKQLFLHLNGGESD DEPSGSSGSSGSSEILENTSPHKIKNFHFISEINLATMPRPYYKDFSSTEDMLESAERLKAYGSIDTLLTLDLTSEDIPE FTSILADKGINYIAEKQYEIIDYFSEDELSSENIDRIVNMIKTIQNNNHKVGIHCAAGNGRSGLIATAMIINKKYTQSRI NSFEEKNKLKEIIDKNKNEINVDAITYDAMKLVRKTNPFAGERTTDIKAAREYSRYLYSKQNR >Mature_942_residues PNILPTDLCANTPTLAIHDNRGFAIRTLAYNRRDHNETIGELISRNRYNASGQLIASRDPRLEVDNFRYQYSLSGVPLRT DSVDSGSTLQLADSAGRTVLTLDAHHTRRWVEYETGEHSLGRPLSYHEQAKGGLKTVTDRFFYATNSEQDKSGNLNGQCV RHYDSAGLQALINQSIIGVPLQQQRRLLTNPKGPVDWFGEKENWGARLSEQPFVSHSTTDALGQLLTQTDAKGHIQRMAY NRAGQLIGSWLTIKNSAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIKTTRPAKKDRPTRLQDLRYDYD PVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIEATGREADTNGIQNSQLPALASLNDSNQFVNYTRSYHYDRAG NLLKIQHTGASQYSTHITVSDSSNHGIQQQEGITARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISDS ESYLYDGGGSRVVKTSLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVITVGAAGRAQVRVLHWERGQPVDIVNDQ LRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLASRNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLSA DPAGTIDGLNLYRMVRNNPVGLMDGDGLMTDKLLAKHEANFAKKNISSMAELKSEIEKLGLLPADSKQLFLHLNGGESDD EPSGSSGSSGSSEILENTSPHKIKNFHFISEINLATMPRPYYKDFSSTEDMLESAERLKAYGSIDTLLTLDLTSEDIPEF TSILADKGINYIAEKQYEIIDYFSEDELSSENIDRIVNMIKTIQNNNHKVGIHCAAGNGRSGLIATAMIINKKYTQSRIN SFEEKNKLKEIIDKNKNEINVDAITYDAMKLVRKTNPFAGERTTDIKAAREYSRYLYSKQNR
Specific function: Rhs Elements Have A Nonessential Function. They May Play An Important Role In The Natural Ecology Of The Cell. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 106111; Mature: 105980
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: PS00383 TYR_PHOSPHATASE_1 ; PS50056 TYR_PHOSPHATASE_2 ; PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNILPTDLCANTPTLAIHDNRGFAIRTLAYNRRDHNETIGELISRNRYNASGQLIASRD CCCCCCCHHHCCCCEEEEECCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEECCC PRLEVDNFRYQYSLSGVPLRTDSVDSGSTLQLADSAGRTVLTLDAHHTRRWVEYETGEHS CCEEECCEEEEEEECCCEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCC LGRPLSYHEQAKGGLKTVTDRFFYATNSEQDKSGNLNGQCVRHYDSAGLQALINQSIIGV CCCCCCHHHHHCCCHHHHHHHEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCC PLQQQRRLLTNPKGPVDWFGEKENWGARLSEQPFVSHSTTDALGQLLTQTDAKGHIQRMA CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH YNRAGQLIGSWLTIKNSAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIK HHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEE TTRPAKKDRPTRLQDLRYDYDPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIE CCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHH ATGREADTNGIQNSQLPALASLNDSNQFVNYTRSYHYDRAGNLLKIQHTGASQYSTHITV HCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEE SDSSNHGIQQQEGITARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISD ECCCCCCCCHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC SESYLYDGGGSRVVKTSLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVITVGAAG CCCEEEECCCCCEEHHHHHHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCEEEEEECCCC RAQVRVLHWERGQPVDIVNDQLRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLAS CEEEEEEEECCCCCCHHHCHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCEEEEEC RNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLSADPAGTIDGLNLYRMVRNNP CCCHHEEEEEEEECCCCCCCCEEEEECEEEECHHHHHHCCCCCCCCCCCHHHHHHHHCCC VGLMDGDGLMTDKLLAKHEANFAKKNISSMAELKSEIEKLGLLPADSKQLFLHLNGGESD CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC DEPSGSSGSSGSSEILENTSPHKIKNFHFISEINLATMPRPYYKDFSSTEDMLESAERLK CCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCHHCCCCHHHHCCCCHHHHHHHHHHHH AYGSIDTLLTLDLTSEDIPEFTSILADKGINYIAEKQYEIIDYFSEDELSSENIDRIVNM HHCCCEEEEEEECCCCCHHHHHHHHHHCCCCHHHHCCHHHHHHCCCCCCCHHHHHHHHHH IKTIQNNNHKVGIHCAAGNGRSGLIATAMIINKKYTQSRINSFEEKNKLKEIIDKNKNEI HHHHHCCCCEEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE NVDAITYDAMKLVRKTNPFAGERTTDIKAAREYSRYLYSKQNR EEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PNILPTDLCANTPTLAIHDNRGFAIRTLAYNRRDHNETIGELISRNRYNASGQLIASRD CCCCCCHHHCCCCEEEEECCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEECCC PRLEVDNFRYQYSLSGVPLRTDSVDSGSTLQLADSAGRTVLTLDAHHTRRWVEYETGEHS CCEEECCEEEEEEECCCEEECCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCC LGRPLSYHEQAKGGLKTVTDRFFYATNSEQDKSGNLNGQCVRHYDSAGLQALINQSIIGV CCCCCCHHHHHCCCHHHHHHHEEEECCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCCC PLQQQRRLLTNPKGPVDWFGEKENWGARLSEQPFVSHSTTDALGQLLTQTDAKGHIQRMA CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH YNRAGQLIGSWLTIKNSAEQVILRSLTYSAAGQKLREESGNGVITEYRYEPQTQRLIGIK HHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEE TTRPAKKDRPTRLQDLRYDYDPVGNILAIHNDAEATRFYRNQKIVPETTYRYDALYQLIE CCCCCCCCCCCHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHH ATGREADTNGIQNSQLPALASLNDSNQFVNYTRSYHYDRAGNLLKIQHTGASQYSTHITV HCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEE SDSSNHGIQQQEGITARDIRSQFDAAGNQQQLQPGQPLRWNSRNQLQQVEPVPRNDGISD ECCCCCCCCHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC SESYLYDGGGSRVVKTSLHKTHNAIQTRSVIYLAGLELRSQYNGNNLTEDFQVITVGAAG CCCEEEECCCCCEEHHHHHHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCEEEEEECCCC RAQVRVLHWERGQPVDIVNDQLRYSFDNHLGSALIELDSDGDIISQEEYYPFGGTAVLAS CEEEEEEEECCCCCCHHHCHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCEEEEEC RNTVEAKYKTVRYSGKERDATGLYYYGYRYYQPWLGRWLSADPAGTIDGLNLYRMVRNNP CCCHHEEEEEEEECCCCCCCCEEEEECEEEECHHHHHHCCCCCCCCCCCHHHHHHHHCCC VGLMDGDGLMTDKLLAKHEANFAKKNISSMAELKSEIEKLGLLPADSKQLFLHLNGGESD CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC DEPSGSSGSSGSSEILENTSPHKIKNFHFISEINLATMPRPYYKDFSSTEDMLESAERLK CCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCHHCCCCHHHHCCCCHHHHHHHHHHHH AYGSIDTLLTLDLTSEDIPEFTSILADKGINYIAEKQYEIIDYFSEDELSSENIDRIVNM HHCCCEEEEEEECCCCCHHHHHHHHHHCCCCHHHHCCHHHHHHCCCCCCCHHHHHHHHHH IKTIQNNNHKVGIHCAAGNGRSGLIATAMIINKKYTQSRINSFEEKNKLKEIIDKNKNEI HHHHHCCCCEEEEEEECCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE NVDAITYDAMKLVRKTNPFAGERTTDIKAAREYSRYLYSKQNR EEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA