Click here to switch to the map view.

The map label for this gene is ygfI [C]

Identifier: 22124101

GI number: 22124101

Start: 185744

End: 186619

Strand: Direct

Name: ygfI [C]

Synonym: y0181

Alternate gene names: 22124101

Gene position: 185744-186619 (Clockwise)

Preceding gene: 22124100

Following gene: 22124103

Centisome position: 4.04

GC content: 34.36

Gene sequence:

>876_bases
GTGGTGCATATGTTTATATCAAAAAATTTACTCGTATTCTTTACTACGGTTCAAGAGGGATCGTTGACTAATGCAGCGGT
GAAACTATTCACAACACCGCCCCCCATGAGTAGAAGCTTAAAAATACTGGAAGAGGAACTGGGTTTTAAACTGTTCACAC
GTACAACATCGGGATTAAAACTGACATTGGAAGGCGCGGCTTTTTATCAAGAAATTTACCCAACCTACGTGCGATTAACT
GAAATAACAAAGAATTACAAAAAGAATAAAAATGGTATTATAAATATCGCCACCTATCAGTTGAATTCAGATCATGCTGG
CGTGATATGTGATTACTTTATAAAAAAAGGTAATTTTAACATTGAGTTAAGAGAGAATATTGGTGATATCAGTCAAATGG
ATATCGTCATCAGTACCAAAGAGATAAAAGGCTATGATTTCGATACTGAGCTAACCGCCAGTTGTGAAATAAAATTACTG
TATGCATCACATTTGAATGACTTGCCTGATAGAGTTGAATATTTAAAGAAACTGCCCTTTATACAAAGTAGTATTTTTTG
CTCTTCCTGCTGCTTTAAGCGATTTTCACACAACCTAATACAACAAGGCTACTCAGGGAATGTACTGCGTATTGATGATG
CCAGAGTTCGCCATGAAATAATTAAAAAAGGGGCAGGAATCTCGCTATCAACAAATTATTTTTTTGATAAAAAAAAGATA
AGTCACTCTACCGAAATAAGTTTTATATCAGATATCAACTTTGACATTACCTATTACATTTACTTTAAAAGCTCAGTAAT
TAACAAAGAATTTTTCATCCAATACATAACGAATAATTCACTCCTGCAGTGGCAGAAGGCAGAGAAAAAACACTAA

Upstream 100 bases:

>100_bases
TGACTAAAATAACACTAATTATTCTAATATATGAAATAGACTTAACTTATATTATAGATATATTGTACATCTACATATCG
CGACAACTAATAGTAAATAA

Downstream 100 bases:

>100_bases
GTCAGATGCAACACGTAGTTAAATACAATTTGTTTAACTAAAATTTAGTTAAACAGAAGATAACAATAAAAACACCAGAC
AGAAACGATAGCGCGTCATT

Product: transcriptional regulator

Products: NA

Alternate protein names: LysR Family Transcriptional Regulator

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MVHMFISKNLLVFFTTVQEGSLTNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTLEGAAFYQEIYPTYVRLT
EITKNYKKNKNGIINIATYQLNSDHAGVICDYFIKKGNFNIELRENIGDISQMDIVISTKEIKGYDFDTELTASCEIKLL
YASHLNDLPDRVEYLKKLPFIQSSIFCSSCCFKRFSHNLIQQGYSGNVLRIDDARVRHEIIKKGAGISLSTNYFFDKKKI
SHSTEISFISDINFDITYYIYFKSSVINKEFFIQYITNNSLLQWQKAEKKH

Sequences:

>Translated_291_residues
MVHMFISKNLLVFFTTVQEGSLTNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTLEGAAFYQEIYPTYVRLT
EITKNYKKNKNGIINIATYQLNSDHAGVICDYFIKKGNFNIELRENIGDISQMDIVISTKEIKGYDFDTELTASCEIKLL
YASHLNDLPDRVEYLKKLPFIQSSIFCSSCCFKRFSHNLIQQGYSGNVLRIDDARVRHEIIKKGAGISLSTNYFFDKKKI
SHSTEISFISDINFDITYYIYFKSSVINKEFFIQYITNNSLLQWQKAEKKH
>Mature_291_residues
MVHMFISKNLLVFFTTVQEGSLTNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLKLTLEGAAFYQEIYPTYVRLT
EITKNYKKNKNGIINIATYQLNSDHAGVICDYFIKKGNFNIELRENIGDISQMDIVISTKEIKGYDFDTELTASCEIKLL
YASHLNDLPDRVEYLKKLPFIQSSIFCSSCCFKRFSHNLIQQGYSGNVLRIDDARVRHEIIKKGAGISLSTNYFFDKKKI
SHSTEISFISDINFDITYYIYFKSSVINKEFFIQYITNNSLLQWQKAEKKH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082184, Length=198, Percent_Identity=26.7676767676768, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33595; Mature: 33595

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHMFISKNLLVFFTTVQEGSLTNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLK
CEEEEEECCEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCEE
LTLEGAAFYQEIYPTYVRLTEITKNYKKNKNGIINIATYQLNSDHAGVICDYFIKKGNFN
EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEECCCEE
IELRENIGDISQMDIVISTKEIKGYDFDTELTASCEIKLLYASHLNDLPDRVEYLKKLPF
EEECCCCCCCCCEEEEEEEEECCCCCCCCCEECEEEEEEEEEHHCCCCHHHHHHHHHCCC
IQSSIFCSSCCFKRFSHNLIQQGYSGNVLRIDDARVRHEIIKKGAGISLSTNYFFDKKKI
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCCEEECCEEEEHHHC
SHSTEISFISDINFDITYYIYFKSSVINKEFFIQYITNNSLLQWQKAEKKH
CCCCCEEEEEECCCEEEEEEEEECCCCCHHHEEEEECCCCEEEEHHHHCCC
>Mature Secondary Structure
MVHMFISKNLLVFFTTVQEGSLTNAAVKLFTTPPPMSRSLKILEEELGFKLFTRTTSGLK
CEEEEEECCEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHCCEEEEEECCCCEE
LTLEGAAFYQEIYPTYVRLTEITKNYKKNKNGIINIATYQLNSDHAGVICDYFIKKGNFN
EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEECCCEE
IELRENIGDISQMDIVISTKEIKGYDFDTELTASCEIKLLYASHLNDLPDRVEYLKKLPF
EEECCCCCCCCCEEEEEEEEECCCCCCCCCEECEEEEEEEEEHHCCCCHHHHHHHHHCCC
IQSSIFCSSCCFKRFSHNLIQQGYSGNVLRIDDARVRHEIIKKGAGISLSTNYFFDKKKI
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCCEEECCEEEEHHHC
SHSTEISFISDINFDITYYIYFKSSVINKEFFIQYITNNSLLQWQKAEKKH
CCCCCEEEEEECCCEEEEEEEEECCCCCHHHEEEEECCCCEEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA