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The map label for this gene is lptC [H]

Identifier: 22124071

GI number: 22124071

Start: 160341

End: 160904

Strand: Direct

Name: lptC [H]

Synonym: y0151

Alternate gene names: 22124071

Gene position: 160341-160904 (Clockwise)

Preceding gene: 22124070

Following gene: 22124072

Centisome position: 3.49

GC content: 45.74

Gene sequence:

>564_bases
ATGAGCAAGACAAGACGCTGGATAACACTGGTACTGGCACTGATTGCGTTAGCCTTGATTGGCTGGAATATGTCAGGTTT
TAATCAACAAGGTGCGCCAGTAGTAGCTGATGATAATGAGCCATCGTCGCAAAGCCAGCATACGGTAACGACTGTTTTTA
ATCCGGTCGGTCAACTGAATTACAAGTTAGTCGCCGAAGAGGTTCAGAATTTTAGCGCGAAGGAACTGACTTGGTTTACC
AAACCGGTCATGACCCTGTTTGGTGACAATGCGGTGGCAACCTGGACAGTGCGCGCTGATCGCGCCAAGCTGACTGATGA
TAAAATGCTTTATCTGTATGGTCATGTTGAGGTTGATAGCCTGACCGCCGATGCGCAGTTAAAAAAAATTCGAACGGATA
ACGCCCAAGTGAATCTAATTACCCAAGATGTCGCCTCAGACGATGAAGTGACCCTTTTCGGTATTGGATTTACCTCTGAA
GGCATGAGAATACGTGGGAACTTGCGGGACAAAACCGCTGAGCTGATTGAAAAGGTTAAAACCTCTTATGAAATCCAAAA
ATAA

Upstream 100 bases:

>100_bases
ATGTGACTCGAATCAAGGGGGGCCGGGGGGCGGTACGTGAAGTATGTGATTTGATATTATTGGCCCAAGACAAGCTCGAA
GGGGCCACAGGATTATCAAT

Downstream 100 bases:

>100_bases
AATAAGTCATCTTTTACTTGCCTGCTCACTTTTAGCCGCAAGCCTGTCTGCATTCGCATTAACTGGCGATACAGAACAAC
CTGCCGAGGTCAAATCCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSKTRRWITLVLALIALALIGWNMSGFNQQGAPVVADDNEPSSQSQHTVTTVFNPVGQLNYKLVAEEVQNFSAKELTWFT
KPVMTLFGDNAVATWTVRADRAKLTDDKMLYLYGHVEVDSLTADAQLKKIRTDNAQVNLITQDVASDDEVTLFGIGFTSE
GMRIRGNLRDKTAELIEKVKTSYEIQK

Sequences:

>Translated_187_residues
MSKTRRWITLVLALIALALIGWNMSGFNQQGAPVVADDNEPSSQSQHTVTTVFNPVGQLNYKLVAEEVQNFSAKELTWFT
KPVMTLFGDNAVATWTVRADRAKLTDDKMLYLYGHVEVDSLTADAQLKKIRTDNAQVNLITQDVASDDEVTLFGIGFTSE
GMRIRGNLRDKTAELIEKVKTSYEIQK
>Mature_186_residues
SKTRRWITLVLALIALALIGWNMSGFNQQGAPVVADDNEPSSQSQHTVTTVFNPVGQLNYKLVAEEVQNFSAKELTWFTK
PVMTLFGDNAVATWTVRADRAKLTDDKMLYLYGHVEVDSLTADAQLKKIRTDNAQVNLITQDVASDDEVTLFGIGFTSEG
MRIRGNLRDKTAELIEKVKTSYEIQK

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=186, Percent_Identity=55.9139784946236, Blast_Score=230, Evalue=5e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 20901; Mature: 20770

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTRRWITLVLALIALALIGWNMSGFNQQGAPVVADDNEPSSQSQHTVTTVFNPVGQLN
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEHEEECCCCHHHH
YKLVAEEVQNFSAKELTWFTKPVMTLFGDNAVATWTVRADRAKLTDDKMLYLYGHVEVDS
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEEEEEEEEEEC
LTADAQLKKIRTDNAQVNLITQDVASDDEVTLFGIGFTSEGMRIRGNLRDKTAELIEKVK
CCCCHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEECCCCEEEECCCCHHHHHHHHHHH
TSYEIQK
HHCCCCC
>Mature Secondary Structure 
SKTRRWITLVLALIALALIGWNMSGFNQQGAPVVADDNEPSSQSQHTVTTVFNPVGQLN
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEHEEECCCCHHHH
YKLVAEEVQNFSAKELTWFTKPVMTLFGDNAVATWTVRADRAKLTDDKMLYLYGHVEVDS
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEEEEEEEEEEC
LTADAQLKKIRTDNAQVNLITQDVASDDEVTLFGIGFTSEGMRIRGNLRDKTAELIEKVK
CCCCHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEECCCCEEEECCCCHHHHHHHHHHH
TSYEIQK
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]