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The map label for this gene is yhcM [H]

Identifier: 22124055

GI number: 22124055

Start: 146556

End: 147695

Strand: Reverse

Name: yhcM [H]

Synonym: y0135

Alternate gene names: 22124055

Gene position: 147695-146556 (Counterclockwise)

Preceding gene: 22124058

Following gene: 161484916

Centisome position: 3.21

GC content: 49.65

Gene sequence:

>1140_bases
TTGCGGATAAACATGCAACAGAGTTCACCTATAACGCTTTATCAGCAGGCACTTGATGCCGGCGGCTATCAACCTGATGA
TGTGCAGCGGCGTGCTGTAGCACGGCTAGAGACAATTTATCAGGCGCTAAATCAGTACCAAAATGTCCCTGCGGCCAGTG
CAAGTTTACGCAACCGCCTGGGCCGTTTATTTGGGAAGCCAGCTCGACGACCACCCGTAAGCCCCGTTCAGGGGTTATAT
ATGTGGGGCGGTGTGGGGCGGGGGAAAACCTGGCTGATGGACCTGTTTTTCCACAGTTTGCCGGGTGAGCGCAAACTCCG
CCTCCATTTTCATCGTTTTATGCTGCGGGTACATCAAGAACTGACCGAGTTACAAGGGCATGAAAATCCATTGGAAATTG
TTGCTGATGGTTTCAAGGCCCAGACTGACGTACTGTGTTTTGACGAGTTCTTTGTCTCGGATATTACCGATGCCATGTTG
TTGGCAACATTATTGGAAGCGCTATTTGCCAGGGGCATCACACTGGTCGCGACGTCTAATATTCCGCCAGATAATCTGTA
CCATAACGGGTTACAGCGCGGGCGTTTTTTACCCGCTATCGCCTTAATTAAGCAACATTGTGAGGTGATGAACGTGGATG
CGGGTATCGATTATCGTTTGCGGACATTGACTCAGGCTAATCTTTATCTGACCCCGTTAAATTCACAGACCGAACAAGCA
ATGGCAGCGATTTTCGTTAAACTTGCGGGGAAAGAAGGGGGAAAGGCAACGGTGTTGGAGGTGAATCACCGGCCTTTGCC
TGCGATTTGTGTGGCTGAGGGGGTGCTGGCGGTTGATTTCCATACATTGTGTGAAGAAGCGCGCAGTCAACTGGATTATA
TCGCTTTGTCTAAGCGCTATCACACGGTATTGCTCCACAATGTCCGTTGCATGGCGGCCCGCGATGAGAACACGGCACGG
CGTTTTCTGGCCTTGGTAGATGAGTTTTATGAACGCCGGGTGAAACTGATTATTGCGGCTGAAGCCTCAATGTTTGAGAT
TTATAGCGGTGAGCGCCTTAAGTTTGAGTACCAGCGTTGTTTATCGCGATTACAAGAGATGCAAAGCGAAGAGTACCTTT
CTTTACCCCATTTACCTTAA

Upstream 100 bases:

>100_bases
ATCAGGTTTTTTCCGCAATTGCGGAGTCGGTAAATGCTACGATTTCCCGAAAAATCAGTAAGAAAGCGTAGCGAAAAGTC
GATAACTATTTTATCAGGGA

Downstream 100 bases:

>100_bases
GGGCTATTGCGCCACAATGGTTCACTTTTGGGCGGCTTAAATGCTATTCTATGGCGGGCGACATTTGTCGTCCGTACTTA
ACATGTTTAATTTATACCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MRINMQQSSPITLYQQALDAGGYQPDDVQRRAVARLETIYQALNQYQNVPAASASLRNRLGRLFGKPARRPPVSPVQGLY
MWGGVGRGKTWLMDLFFHSLPGERKLRLHFHRFMLRVHQELTELQGHENPLEIVADGFKAQTDVLCFDEFFVSDITDAML
LATLLEALFARGITLVATSNIPPDNLYHNGLQRGRFLPAIALIKQHCEVMNVDAGIDYRLRTLTQANLYLTPLNSQTEQA
MAAIFVKLAGKEGGKATVLEVNHRPLPAICVAEGVLAVDFHTLCEEARSQLDYIALSKRYHTVLLHNVRCMAARDENTAR
RFLALVDEFYERRVKLIIAAEASMFEIYSGERLKFEYQRCLSRLQEMQSEEYLSLPHLP

Sequences:

>Translated_379_residues
MRINMQQSSPITLYQQALDAGGYQPDDVQRRAVARLETIYQALNQYQNVPAASASLRNRLGRLFGKPARRPPVSPVQGLY
MWGGVGRGKTWLMDLFFHSLPGERKLRLHFHRFMLRVHQELTELQGHENPLEIVADGFKAQTDVLCFDEFFVSDITDAML
LATLLEALFARGITLVATSNIPPDNLYHNGLQRGRFLPAIALIKQHCEVMNVDAGIDYRLRTLTQANLYLTPLNSQTEQA
MAAIFVKLAGKEGGKATVLEVNHRPLPAICVAEGVLAVDFHTLCEEARSQLDYIALSKRYHTVLLHNVRCMAARDENTAR
RFLALVDEFYERRVKLIIAAEASMFEIYSGERLKFEYQRCLSRLQEMQSEEYLSLPHLP
>Mature_379_residues
MRINMQQSSPITLYQQALDAGGYQPDDVQRRAVARLETIYQALNQYQNVPAASASLRNRLGRLFGKPARRPPVSPVQGLY
MWGGVGRGKTWLMDLFFHSLPGERKLRLHFHRFMLRVHQELTELQGHENPLEIVADGFKAQTDVLCFDEFFVSDITDAML
LATLLEALFARGITLVATSNIPPDNLYHNGLQRGRFLPAIALIKQHCEVMNVDAGIDYRLRTLTQANLYLTPLNSQTEQA
MAAIFVKLAGKEGGKATVLEVNHRPLPAICVAEGVLAVDFHTLCEEARSQLDYIALSKRYHTVLLHNVRCMAARDENTAR
RFLALVDEFYERRVKLIIAAEASMFEIYSGERLKFEYQRCLSRLQEMQSEEYLSLPHLP

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=410, Percent_Identity=33.9024390243902, Blast_Score=227, Evalue=2e-59,
Organism=Escherichia coli, GI1789627, Length=374, Percent_Identity=64.9732620320856, Blast_Score=500, Evalue=1e-143,
Organism=Caenorhabditis elegans, GI17505769, Length=410, Percent_Identity=32.6829268292683, Blast_Score=236, Evalue=1e-62,
Organism=Saccharomyces cerevisiae, GI6320783, Length=398, Percent_Identity=28.1407035175879, Blast_Score=143, Evalue=4e-35,
Organism=Drosophila melanogaster, GI20129913, Length=428, Percent_Identity=30.3738317757009, Blast_Score=181, Evalue=5e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 43075; Mature: 43075

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRINMQQSSPITLYQQALDAGGYQPDDVQRRAVARLETIYQALNQYQNVPAASASLRNRL
CCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
GRLFGKPARRPPVSPVQGLYMWGGVGRGKTWLMDLFFHSLPGERKLRLHFHRFMLRVHQE
HHHHCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LTELQGHENPLEIVADGFKAQTDVLCFDEFFVSDITDAMLLATLLEALFARGITLVATSN
HHHHCCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECC
IPPDNLYHNGLQRGRFLPAIALIKQHCEVMNVDAGIDYRLRTLTQANLYLTPLNSQTEQA
CCCCHHHHHHHHCCCHHHHHHHHHHHHHEEECCCCCCHHHHEEEECCEEEECCCCHHHHH
MAAIFVKLAGKEGGKATVLEVNHRPLPAICVAEGVLAVDFHTLCEEARSQLDYIALSKRY
HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HTVLLHNVRCMAARDENTARRFLALVDEFYERRVKLIIAAEASMFEIYSGERLKFEYQRC
HHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHCCCCCHHHHHHH
LSRLQEMQSEEYLSLPHLP
HHHHHHHCCHHCCCCCCCC
>Mature Secondary Structure
MRINMQQSSPITLYQQALDAGGYQPDDVQRRAVARLETIYQALNQYQNVPAASASLRNRL
CCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
GRLFGKPARRPPVSPVQGLYMWGGVGRGKTWLMDLFFHSLPGERKLRLHFHRFMLRVHQE
HHHHCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LTELQGHENPLEIVADGFKAQTDVLCFDEFFVSDITDAMLLATLLEALFARGITLVATSN
HHHHCCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECC
IPPDNLYHNGLQRGRFLPAIALIKQHCEVMNVDAGIDYRLRTLTQANLYLTPLNSQTEQA
CCCCHHHHHHHHCCCHHHHHHHHHHHHHEEECCCCCCHHHHEEEECCEEEECCCCHHHHH
MAAIFVKLAGKEGGKATVLEVNHRPLPAICVAEGVLAVDFHTLCEEARSQLDYIALSKRY
HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HTVLLHNVRCMAARDENTARRFLALVDEFYERRVKLIIAAEASMFEIYSGERLKFEYQRC
HHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHCCCCCHHHHHHH
LSRLQEMQSEEYLSLPHLP
HHHHHHHCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]