| Definition | Streptococcus pyogenes MGAS315 chromosome, complete genome. |
|---|---|
| Accession | NC_004070 |
| Length | 1,900,521 |
Click here to switch to the map view.
The map label for this gene is recD [H]
Identifier: 21911129
GI number: 21911129
Start: 1592011
End: 1594464
Strand: Direct
Name: recD [H]
Synonym: SpyM3_1593
Alternate gene names: 21911129
Gene position: 1592011-1594464 (Clockwise)
Preceding gene: 21911128
Following gene: 21911130
Centisome position: 83.77
GC content: 41.24
Gene sequence:
>2454_bases ATGGAATACGTTTTTACAGGTACTGTTGATCGTATCATTTTTGAAAACCAGGCTAATTTCTTTAAAATTCTCCTCCTTGC CATTGAGGATACAGACAGTGACATTGACGACTTTGAAATCATTATCACAGGAACGATGGCTGACATTATTGAAGGAGATG ACTACACCTTTTGGGGGGAATTGACCCAGCACCCTAAATACGGTCAACAACTCAAACTAAGCCGTTACCAAAAAATCAAA CCTAGTTCATCTGGTTTGGTTAATTATTTCTCTAGTGACCATTTTAAGGGGATTGGTAAAAAAACAGCGGAGAAAATCAT TGCGCTATATGGTCATAATACCATTGACCATATTTTAGAAGACCCAAGCAAATTAGAAACTATCTCTGGCCTATCTAAGG CTAATCGTCAAGCCTTTGTCGCTAAACTAAAATTGAATTACGGCACAGAGCAACTGATTGCTGGTCTCGTCGAACTTGGC CTTAGCAACCGTTTTGCCTTTCAAGCGTTTGAAAAGTATAAAGAAGAGGCTCTTGACCTTGTTAAAGAAAATCCCTATCA GTTAGTCGAAGATCTACAAGGTTTTGGGTTTAAAATGGCAGATGCTCTCGCTGAAAACTTAGGGATTGAAAGCGACTCTC CGAAACGTTTTCGTGCAGCCCTCCTTCACTGTCTCTTGGAAGAATCCATCAATCGAGGAGATACTTATGTCCAAGCACGA CAATTATTAGACTTTGCCATCACACTCCTTGAAGATGCACGTCAAGTAGAATGTGATCCTACTGCTGTGGCTGAACAACT AAGCGAGTTAATCATAGAGGGCAAAATCAAAAACAGTGACACCAAACTGTTTGATGCTAGCCTTTATTTTGCTGAAGAAG GGATTGCTAGCAACATCTCTCGTCTCTTAGATACTCCTTTAAGTCAGTCATTTAGTCATAATACCATTCAAACAACCATC CAAACCGTTCAAAAAGACTTTACCATCACCTATGACCAAGTGCAGCAAGAAGCCATTACTAAGGCCTTAACCAGCAAGGT CTTTCTCCTAACAGGTGGTCCCGGAACAGGAAAAACAACTGTTATTCGAGGCATTTTGCAGGCTTACGCGAACCTGCATC AGATTGATTTGGATAAAAAAGACCTTCCTATCTTGTTAGCAGCTCCAACAGGTCGAGCTGCACGTCGCATGAATGAGTTG ACTGGACTTCCTAGCGCAACCATCCACAGGCACTTAGGCCTTAATGGCGACAACGATTACCAAGCCATGGAGGATTATCT AGACTGCGACTTGCTGATTGTCGATGAATTTTCAATGGTGGATACCTGGCTTGCCAACCAGTTGTTAGGAGCGATTAACT CAACAACTCAAGTGATTATTGTCGGAGATAGTGACCAGCTTCCTTCGGTTGGACCCGGTCAAGTCCTGTCAGATCTTTTA AAAGTCAATAGCCTGCCCCAAATCGCCTTGCAAAAGATATTTCGTCAATCCCAAGAATCTACTATTGTCAATTTGGCAGA CCAGATGCGTCGAGGAATCTTAGCTGCTGACTTTCGTGATAAAAAAGCTGACCGTTCTTATTTTGAAGCCCAAGCAGCCT TTATCCCTGACATGATTCAAAAAATTGTCCTATCTGCTATTAAAAGTGGCATCCCTGCTGAGAAAATTCAAATTTTAGCG CCTATGTACAAAGGACAAGCTGGCATCAATCATCTTAATCAACTCATGCAAGAACTTCTCAATCCCTTGCAAGGACAAAC AGAATTTCTGTTCAATGATACGCATTTTCGTAAAGGTGATAAAGTCCTGCACTTAGTCAACGATGCTCAGTTGAATGTCT TTAACGGAGATATTGGTTATATTACAGATTTGATTCCTGCTAAATACACCGAATCTAAACAAGACGAATTAATCTTAGAT TTTGACGGTAGCGAAGTCACGTACCCTAGAAATGAATGGCTAAAATTAACCCTGGCCTATGCCATGAGCATTCATAAATC GCAAGGGAGTGAGTTTCAAGTGGTGATTTTACCTATCACACGCCAAAGCGGCCGACTCTTGCAACGAAATGTGATTTACA CGGCCATTACTCGGTCTAAAAGTAAGTTAATTCTGTTGGGAGAATATACTGCCTTTGAGTATGCTATTAAACACGAAGGC GATAAACGCCAAACCTACTTGATCGAACGCTTCCAAGAACAATCCGACTTAGCCTCCTCTCAACCTAACCAAGAGCTAAA ATCAAAAGAGCAAACCTCCCTTTTTTCTAATACGGCAACCCTTGAGGACGACTCTCAAAAATCTTCCTCTCAATCAACAA ACTCTAACCCCACTGAGAACTCTCAGTCAGATAATGATGATTTTAGGTTAACACCTGAGAATTATTCGACTATCGATTCG ATGATAGGGCTTACAGAGTCAGATATTGCCCTCTTTTTCCAGAAAAAATCCTAG
Upstream 100 bases:
>100_bases AGCTCGTTTTTGGCCACTCAATAAAATGACCGTCTTTAATTAGAAAAAACCTGCCTTTGGGCAGGTTTTCAGTTATCTTG TATAAATAGAAAGAGTTACT
Downstream 100 bases:
>100_bases AAAAACGGACATTTTTGATTAATCTATGGTATAATATTTTTTGTATTAAACACATTGTACAATTTCGGATTAAGGACTCT AGGAGGATTATATGATTTCT
Product: putative exodeoxyribonuclease V alpha subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 817; Mature: 817
Protein sequence:
>817_residues MEYVFTGTVDRIIFENQANFFKILLLAIEDTDSDIDDFEIIITGTMADIIEGDDYTFWGELTQHPKYGQQLKLSRYQKIK PSSSGLVNYFSSDHFKGIGKKTAEKIIALYGHNTIDHILEDPSKLETISGLSKANRQAFVAKLKLNYGTEQLIAGLVELG LSNRFAFQAFEKYKEEALDLVKENPYQLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESINRGDTYVQAR QLLDFAITLLEDARQVECDPTAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIASNISRLLDTPLSQSFSHNTIQTTI QTVQKDFTITYDQVQQEAITKALTSKVFLLTGGPGTGKTTVIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNEL TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLIVDEFSMVDTWLANQLLGAINSTTQVIIVGDSDQLPSVGPGQVLSDLL KVNSLPQIALQKIFRQSQESTIVNLADQMRRGILAADFRDKKADRSYFEAQAAFIPDMIQKIVLSAIKSGIPAEKIQILA PMYKGQAGINHLNQLMQELLNPLQGQTEFLFNDTHFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELILD FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNVIYTAITRSKSKLILLGEYTAFEYAIKHEG DKRQTYLIERFQEQSDLASSQPNQELKSKEQTSLFSNTATLEDDSQKSSSQSTNSNPTENSQSDNDDFRLTPENYSTIDS MIGLTESDIALFFQKKS
Sequences:
>Translated_817_residues MEYVFTGTVDRIIFENQANFFKILLLAIEDTDSDIDDFEIIITGTMADIIEGDDYTFWGELTQHPKYGQQLKLSRYQKIK PSSSGLVNYFSSDHFKGIGKKTAEKIIALYGHNTIDHILEDPSKLETISGLSKANRQAFVAKLKLNYGTEQLIAGLVELG LSNRFAFQAFEKYKEEALDLVKENPYQLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESINRGDTYVQAR QLLDFAITLLEDARQVECDPTAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIASNISRLLDTPLSQSFSHNTIQTTI QTVQKDFTITYDQVQQEAITKALTSKVFLLTGGPGTGKTTVIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNEL TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLIVDEFSMVDTWLANQLLGAINSTTQVIIVGDSDQLPSVGPGQVLSDLL KVNSLPQIALQKIFRQSQESTIVNLADQMRRGILAADFRDKKADRSYFEAQAAFIPDMIQKIVLSAIKSGIPAEKIQILA PMYKGQAGINHLNQLMQELLNPLQGQTEFLFNDTHFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELILD FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNVIYTAITRSKSKLILLGEYTAFEYAIKHEG DKRQTYLIERFQEQSDLASSQPNQELKSKEQTSLFSNTATLEDDSQKSSSQSTNSNPTENSQSDNDDFRLTPENYSTIDS MIGLTESDIALFFQKKS >Mature_817_residues MEYVFTGTVDRIIFENQANFFKILLLAIEDTDSDIDDFEIIITGTMADIIEGDDYTFWGELTQHPKYGQQLKLSRYQKIK PSSSGLVNYFSSDHFKGIGKKTAEKIIALYGHNTIDHILEDPSKLETISGLSKANRQAFVAKLKLNYGTEQLIAGLVELG LSNRFAFQAFEKYKEEALDLVKENPYQLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESINRGDTYVQAR QLLDFAITLLEDARQVECDPTAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIASNISRLLDTPLSQSFSHNTIQTTI QTVQKDFTITYDQVQQEAITKALTSKVFLLTGGPGTGKTTVIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNEL TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLIVDEFSMVDTWLANQLLGAINSTTQVIIVGDSDQLPSVGPGQVLSDLL KVNSLPQIALQKIFRQSQESTIVNLADQMRRGILAADFRDKKADRSYFEAQAAFIPDMIQKIVLSAIKSGIPAEKIQILA PMYKGQAGINHLNQLMQELLNPLQGQTEFLFNDTHFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELILD FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNVIYTAITRSKSKLILLGEYTAFEYAIKHEG DKRQTYLIERFQEQSDLASSQPNQELKSKEQTSLFSNTATLEDDSQKSSSQSTNSNPTENSQSDNDDFRLTPENYSTIDS MIGLTESDIALFFQKKS
Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789182, Length=481, Percent_Identity=27.8586278586279, Blast_Score=109, Evalue=9e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR006345 [H]
Pfam domain/function: NA
EC number: 3.1.11.5
Molecular weight: Translated: 91526; Mature: 91526
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEYVFTGTVDRIIFENQANFFKILLLAIEDTDSDIDDFEIIITGTMADIIEGDDYTFWGE CCEEEECCHHHHEECCCCCEEEEEEEEEECCCCCCCCEEEEEEECHHHHHCCCCEEEECC LTQHPKYGQQLKLSRYQKIKPSSSGLVNYFSSDHFKGIGKKTAEKIIALYGHNTIDHILE HHCCCCCCCHHHHHHHHCCCCCCCCHHHHHCCCHHCCCCHHHHHHHHHHHCCCHHHHHHC DPSKLETISGLSKANRQAFVAKLKLNYGTEQLIAGLVELGLSNRFAFQAFEKYKEEALDL CHHHHHHHHHHHHHCHHEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VKENPYQLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESINRGDTYVQAR HHCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH QLLDFAITLLEDARQVECDPTAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIASNIS HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHH RLLDTPLSQSFSHNTIQTTIQTVQKDFTITYDQVQQEAITKALTSKVFLLTGGPGTGKTT HHHCCCHHHCCCCHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHCEEEEEECCCCCCHHH VIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNELTGLPSATIHRHLGLNGDNDY HHHHHHHHHHHHHEECCCCCCCCEEEECCCCHHHHHHHHHCCCCCHHHHHHCCCCCCCHH QAMEDYLDCDLLIVDEFSMVDTWLANQLLGAINSTTQVIIVGDSDQLPSVGPGQVLSDLL HHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHH KVNSLPQIALQKIFRQSQESTIVNLADQMRRGILAADFRDKKADRSYFEAQAAFIPDMIQ HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHH KIVLSAIKSGIPAEKIQILAPMYKGQAGINHLNQLMQELLNPLQGQTEFLFNDTHFRKGD HHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC KVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELILDFDGSEVTYPRNEWLKLTLAY CEEEEECCCEEEEEECCHHHHHHHCCCCCCCCCCCCEEEEECCCEECCCCHHHHHHHHHH AMSIHKSQGSEFQVVILPITRQSGRLLQRNVIYTAITRSKSKLILLGEYTAFEYAIKHEG HHHHHHCCCCEEEEEEEEECCCCCCHHHHHHEEEEEECCCCCEEEEECCHHHHHHHHCCC DKRQTYLIERFQEQSDLASSQPNQELKSKEQTSLFSNTATLEDDSQKSSSQSTNSNPTEN CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC SQSDNDDFRLTPENYSTIDSMIGLTESDIALFFQKKS CCCCCCCEEECCCCHHHHHHHHCCCCCCEEEEEEECC >Mature Secondary Structure MEYVFTGTVDRIIFENQANFFKILLLAIEDTDSDIDDFEIIITGTMADIIEGDDYTFWGE CCEEEECCHHHHEECCCCCEEEEEEEEEECCCCCCCCEEEEEEECHHHHHCCCCEEEECC LTQHPKYGQQLKLSRYQKIKPSSSGLVNYFSSDHFKGIGKKTAEKIIALYGHNTIDHILE HHCCCCCCCHHHHHHHHCCCCCCCCHHHHHCCCHHCCCCHHHHHHHHHHHCCCHHHHHHC DPSKLETISGLSKANRQAFVAKLKLNYGTEQLIAGLVELGLSNRFAFQAFEKYKEEALDL CHHHHHHHHHHHHHCHHEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VKENPYQLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESINRGDTYVQAR HHCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH QLLDFAITLLEDARQVECDPTAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIASNIS HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHH RLLDTPLSQSFSHNTIQTTIQTVQKDFTITYDQVQQEAITKALTSKVFLLTGGPGTGKTT HHHCCCHHHCCCCHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHCEEEEEECCCCCCHHH VIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNELTGLPSATIHRHLGLNGDNDY HHHHHHHHHHHHHEECCCCCCCCEEEECCCCHHHHHHHHHCCCCCHHHHHHCCCCCCCHH QAMEDYLDCDLLIVDEFSMVDTWLANQLLGAINSTTQVIIVGDSDQLPSVGPGQVLSDLL HHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHH KVNSLPQIALQKIFRQSQESTIVNLADQMRRGILAADFRDKKADRSYFEAQAAFIPDMIQ HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHH KIVLSAIKSGIPAEKIQILAPMYKGQAGINHLNQLMQELLNPLQGQTEFLFNDTHFRKGD HHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC KVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELILDFDGSEVTYPRNEWLKLTLAY CEEEEECCCEEEEEECCHHHHHHHCCCCCCCCCCCCEEEEECCCEECCCCHHHHHHHHHH AMSIHKSQGSEFQVVILPITRQSGRLLQRNVIYTAITRSKSKLILLGEYTAFEYAIKHEG HHHHHHCCCCEEEEEEEEECCCCCCHHHHHHEEEEEECCCCCEEEEECCHHHHHHHHCCC DKRQTYLIERFQEQSDLASSQPNQELKSKEQTSLFSNTATLEDDSQKSSSQSTNSNPTEN CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC SQSDNDDFRLTPENYSTIDSMIGLTESDIALFFQKKS CCCCCCCEEECCCCHHHHHHHHCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]