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The map label for this gene is yncI [H]

Identifier: 21911051

GI number: 21911051

Start: 1507020

End: 1508012

Strand: Direct

Name: yncI [H]

Synonym: SpyM3_1515

Alternate gene names: 21911051

Gene position: 1507020-1508012 (Clockwise)

Preceding gene: 21911050

Following gene: 21911052

Centisome position: 79.3

GC content: 37.97

Gene sequence:

>993_bases
ATGGAAGATTTTATTGAAATGAATGAACCATTGTTTGCGACCTACGTTGATTTGAGTGAAGGTTGTCCGTCTCATGATAC
CTTAGAGCGTGTGATTAGTCTTGTTAATTCAGAGCGTTTAAAAGAGCTTAAAGTTCAATTTGAGCAATCATTGACAAGCT
TAGATGCCGTTCATCAACTGATTTCAGTGGAGGGTAAAACGATTCGAGACAATCGAGGTAAAAATCAGAAGCCTGTTCAT
ATTGTAACGGCTTATGATGGGGGTCATCATCTTAGTTTGGGACAGGTAGCGGTTGAGGAGAAAAGTAATGAAATTGTTGC
CATTCCTCAGTTATTGCGGACAATTGATATCCGTAAAAGCATTGTAACGATAGACGCAATGGGCACGCAGACGGCTATCG
TTGATACGATTATAAAAGGTAAAGCAGACTATTGCTTAGCCGTCAAAGGAAATCAAAAAACACTTTATGATGCTATTGCT
CTTTATTTTAGTGATGTCAACTTATTGGAAGAACTCCAAGAAAATGCACAGTATTATCAGACTGTTGAAAAATCTAGGGG
ACAGATTGAAGTTAGAGAATACTGGGTGTCTTCCGATATCAAATGGTTGTGTCAAAACCATCCCAAATGGCATAAGTTAC
GTGGTATTGGGATGACTCGTAACATGATTGATAAGGATGGTCAGCTGAGTCAAGAGAATCGTTATTTTATCTTTAGCTTT
AAGCCGGATGTCCTCACATTTGCCAATTGTGTACGAGGTCATTGGCAGATAGAGAGTATGCACTGGTTATTGGACGTTGT
TTATCATGAAGATCATCATCAGACATTGGATAAAAGAGCCGCATTTAACCTAAATCTTATCCGAAAAATGTGCTTATATT
TTCTCAAAGTGATGGTATTTCCTAAAAAAGACCTCAGTTATCGTCGCAAACAACGGTATATTTCTGTCCATTTGGAAGAT
TATTTAGTCCAATTATTTGGAGAAAGAGGCTAA

Upstream 100 bases:

>100_bases
ATTGGATAGTCGTCAATCTTGGAAAATTCGCTCCCCCTTATCAACCATTCTATTTCTTGTCTTCGTTTGTCAGTTAGCTG
GCATTGAAACCTGGAAGGAG

Downstream 100 bases:

>100_bases
GCAGATGATTGATTTAAAAAGGAATCTTTTCAAAATTGATGTCCGGGCACAAAAGGATGATGAGAAAGTTTTCATGCGTA
CGGCGTGAAAGATTCCCTCA

Product: IS1548 transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MEDFIEMNEPLFATYVDLSEGCPSHDTLERVISLVNSERLKELKVQFEQSLTSLDAVHQLISVEGKTIRDNRGKNQKPVH
IVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQKTLYDAIA
LYFSDVNLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWLCQNHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSF
KPDVLTFANCVRGHWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLED
YLVQLFGERG

Sequences:

>Translated_330_residues
MEDFIEMNEPLFATYVDLSEGCPSHDTLERVISLVNSERLKELKVQFEQSLTSLDAVHQLISVEGKTIRDNRGKNQKPVH
IVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQKTLYDAIA
LYFSDVNLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWLCQNHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSF
KPDVLTFANCVRGHWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLED
YLVQLFGERG
>Mature_330_residues
MEDFIEMNEPLFATYVDLSEGCPSHDTLERVISLVNSERLKELKVQFEQSLTSLDAVHQLISVEGKTIRDNRGKNQKPVH
IVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQKTLYDAIA
LYFSDVNLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWLCQNHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSF
KPDVLTFANCVRGHWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKKDLSYRRKQRYISVHLED
YLVQLFGERG

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1787733, Length=338, Percent_Identity=33.4319526627219, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1789896, Length=339, Percent_Identity=32.7433628318584, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1786924, Length=200, Percent_Identity=36, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 38384; Mature: 38384

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDFIEMNEPLFATYVDLSEGCPSHDTLERVISLVNSERLKELKVQFEQSLTSLDAVHQL
CCCCHHCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISVEGKTIRDNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKS
HHCCCCEECCCCCCCCCCEEEEEEECCCCEEEHHHHHECCCCCCEEEHHHHHHHHHHHHH
IVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQKTLYDAIALYFSDVNLLEELQENAQYYQ
EEEEECCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVEKSRGQIEVREYWVSSDIKWLCQNHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSF
HHHHCCCCEEEEHHHHCCCHHHHHCCCCCHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEE
KPDVLTFANCVRGHWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVF
CCCHHHHHHHHCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
PKKDLSYRRKQRYISVHLEDYLVQLFGERG
CCCHHHHHHHHHHEEEHHHHHHHHHHCCCC
>Mature Secondary Structure
MEDFIEMNEPLFATYVDLSEGCPSHDTLERVISLVNSERLKELKVQFEQSLTSLDAVHQL
CCCCHHCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISVEGKTIRDNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSNEIVAIPQLLRTIDIRKS
HHCCCCEECCCCCCCCCCEEEEEEECCCCEEEHHHHHECCCCCCEEEHHHHHHHHHHHHH
IVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQKTLYDAIALYFSDVNLLEELQENAQYYQ
EEEEECCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVEKSRGQIEVREYWVSSDIKWLCQNHPKWHKLRGIGMTRNMIDKDGQLSQENRYFIFSF
HHHHCCCCEEEEHHHHCCCHHHHHCCCCCHHHHCCCCCHHHHCCCCCCCCCCCCEEEEEE
KPDVLTFANCVRGHWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVF
CCCHHHHHHHHCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
PKKDLSYRRKQRYISVHLEDYLVQLFGERG
CCCHHHHHHHHHHEEEHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]