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The map label for this gene is dnaD [H]

Identifier: 21910790

GI number: 21910790

Start: 1265306

End: 1265719

Strand: Reverse

Name: dnaD [H]

Synonym: SpyM3_1254

Alternate gene names: 21910790

Gene position: 1265719-1265306 (Counterclockwise)

Preceding gene: 21910791

Following gene: 21910789

Centisome position: 66.6

GC content: 36.23

Gene sequence:

>414_bases
ATGATGAAGAAGAAAGGAGAAGCATTGGACAAAAAAGAACTGTTTGATAATTTCCAAAATAATTGGATGCGTCTCTTATC
ACCATTTGAGATTGAAGACATTAATAAGTGGATTGACGAAGAGAAGATGCCTGTTGAAGTTGTTAACGAGGCACTAAAAT
CGACAATTCTATACAACGCACCAAACCTTAGATACTTAAACAGAGTCTTGAACAACTGGAAGCGACAAGGGATTGATACA
GTCGAGAAAGTCGAATTTGCTAGGTTGCAATTTGAAAATAAAAAGCTCAGTCAAAATAAAAATCATCAATCCAACGTCCC
AAGCTGGTCGAATCCAGACTACAAAGAACCAGATTTAAAAGAATTTGCACTAGGAAGCATAGACGGTATAGAAGATGGAT
CAGGAGATTTTTAA

Upstream 100 bases:

>100_bases
AAAATCTAAAGTTAGAAAATCTAAAGTTAGAATTTCGCACACTAATAAATACTAACATTAAATAAATACTAAATAACAAT
AAATACTAACAGACAATAAG

Downstream 100 bases:

>100_bases
TTTTTTTAACAAACAAATCAAAAAAGATTTTGGTAAAACGGCGAGTAAAGAGACTTTTGCTAAGTTTGCTAGTTACTGCG
CCGAAGGAATCGAAAAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MMKKKGEALDKKELFDNFQNNWMRLLSPFEIEDINKWIDEEKMPVEVVNEALKSTILYNAPNLRYLNRVLNNWKRQGIDT
VEKVEFARLQFENKKLSQNKNHQSNVPSWSNPDYKEPDLKEFALGSIDGIEDGSGDF

Sequences:

>Translated_137_residues
MMKKKGEALDKKELFDNFQNNWMRLLSPFEIEDINKWIDEEKMPVEVVNEALKSTILYNAPNLRYLNRVLNNWKRQGIDT
VEKVEFARLQFENKKLSQNKNHQSNVPSWSNPDYKEPDLKEFALGSIDGIEDGSGDF
>Mature_137_residues
MMKKKGEALDKKELFDNFQNNWMRLLSPFEIEDINKWIDEEKMPVEVVNEALKSTILYNAPNLRYLNRVLNNWKRQGIDT
VEKVEFARLQFENKKLSQNKNHQSNVPSWSNPDYKEPDLKEFALGSIDGIEDGSGDF

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 16095; Mature: 16095

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKKGEALDKKELFDNFQNNWMRLLSPFEIEDINKWIDEEKMPVEVVNEALKSTILYNA
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
PNLRYLNRVLNNWKRQGIDTVEKVEFARLQFENKKLSQNKNHQSNVPSWSNPDYKEPDLK
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
EFALGSIDGIEDGSGDF
HHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MMKKKGEALDKKELFDNFQNNWMRLLSPFEIEDINKWIDEEKMPVEVVNEALKSTILYNA
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
PNLRYLNRVLNNWKRQGIDTVEKVEFARLQFENKKLSQNKNHQSNVPSWSNPDYKEPDLK
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
EFALGSIDGIEDGSGDF
HHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]