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The map label for this gene is rbsR [H]

Identifier: 21910722

GI number: 21910722

Start: 1212309

End: 1213286

Strand: Reverse

Name: rbsR [H]

Synonym: SpyM3_1186

Alternate gene names: 21910722

Gene position: 1213286-1212309 (Counterclockwise)

Preceding gene: 21910723

Following gene: 21910721

Centisome position: 63.84

GC content: 37.73

Gene sequence:

>978_bases
ATGGTAACCATTAAACAAGTTGCTGAAGAAGCAGGTGTTTCTAGATCAACAGTCTCCAGGTATATTTCTCAAAAAGGATA
TGTATCTGATGATGCAAGGCATAAAATCAAAGCAGCGATAGCAAAATTACATTACACTCCAAATGTCTTGGCGCAGTCAT
TGAAGACGAAAAAAAATCAACTAGTCGGTTTATTATTACCAGACATTTCCAATCCTTTTTTTCCGAGGTTAGCAAGAGGA
GCAGAAGAATATTTAAAAGAAAAGGGGTATCGGGTTATGCTAGGAAATATTTCAGACAGCGAAGCTCTTGAAGAAGAATA
CGTCCATGTCCTTCTTCAAAGCAATGCTGCTGGCATTATTACTACCCATGACTTTACAAAGCGGTATCCTACTCTTGCTA
TTCCAGTTGTAGTGGTAGATCGTGTTGACCAAGAGACCCAGTACGGTGTCTTTTCAGATAATAGGGCAGGGGGCTTATTG
GCGGCTCAGACTGTCTGGCAAGCAGGGGCAAAAGAAGTTTTGTTAATAAGAGGTCCGCTGGATAATGCTGAAAACATTAA
TGAGCGGTTTGAAGCTAGTTTTTCTTACCTTCAAAAACAAGACGTGACTATGTATGTGTGTGATAGTCAGAATTTTGATT
TTGAAAGTATTCAGCTAGAAGCTAGTTCCAACCTCAAGTGTTACCCAACAATAGACAGTATTATAGCACCTTCTGATATC
CATGCTATTGCTTATATTCATGAACTGCATTCTCAAGGTAAAAAGATTCCTCAAGATGTTCAAATAATAGGTTATGATGA
CATTTTAATGAGTCAATTTATTTATCCTTCTTTATCGACTATTCATCAATCCTCTTATTTGATGGGCCGTTATGCCGCCG
AATTAGTTTATACTATTGCTAGTCAATTAACTGTGAAAGCAAATCGGATTAAATTGCCTGTTCACTACGTTGAGCGAGAA
ACAATAAGGAAAAGATAA

Upstream 100 bases:

>100_bases
CTGGAAAGCCTTGCAATAGACAAGTTAACGTTATAACAACTAAATTAAAAACTTGAGATTGAAAAATTCCCATAAACTTA
TTTTACAAGGAGGTAAGGCT

Downstream 100 bases:

>100_bases
GTAATAATATTAGTCCAGATTTTAGCAGGTATGATGAAGATTTATTGGGATTTACCTTCTACTTTAAAAGAAGTTATCTG
TCATTACTTTCATCGCTATC

Product: putative ribose transport operon repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MVTIKQVAEEAGVSRSTVSRYISQKGYVSDDARHKIKAAIAKLHYTPNVLAQSLKTKKNQLVGLLLPDISNPFFPRLARG
AEEYLKEKGYRVMLGNISDSEALEEEYVHVLLQSNAAGIITTHDFTKRYPTLAIPVVVVDRVDQETQYGVFSDNRAGGLL
AAQTVWQAGAKEVLLIRGPLDNAENINERFEASFSYLQKQDVTMYVCDSQNFDFESIQLEASSNLKCYPTIDSIIAPSDI
HAIAYIHELHSQGKKIPQDVQIIGYDDILMSQFIYPSLSTIHQSSYLMGRYAAELVYTIASQLTVKANRIKLPVHYVERE
TIRKR

Sequences:

>Translated_325_residues
MVTIKQVAEEAGVSRSTVSRYISQKGYVSDDARHKIKAAIAKLHYTPNVLAQSLKTKKNQLVGLLLPDISNPFFPRLARG
AEEYLKEKGYRVMLGNISDSEALEEEYVHVLLQSNAAGIITTHDFTKRYPTLAIPVVVVDRVDQETQYGVFSDNRAGGLL
AAQTVWQAGAKEVLLIRGPLDNAENINERFEASFSYLQKQDVTMYVCDSQNFDFESIQLEASSNLKCYPTIDSIIAPSDI
HAIAYIHELHSQGKKIPQDVQIIGYDDILMSQFIYPSLSTIHQSSYLMGRYAAELVYTIASQLTVKANRIKLPVHYVERE
TIRKR
>Mature_325_residues
MVTIKQVAEEAGVSRSTVSRYISQKGYVSDDARHKIKAAIAKLHYTPNVLAQSLKTKKNQLVGLLLPDISNPFFPRLARG
AEEYLKEKGYRVMLGNISDSEALEEEYVHVLLQSNAAGIITTHDFTKRYPTLAIPVVVVDRVDQETQYGVFSDNRAGGLL
AAQTVWQAGAKEVLLIRGPLDNAENINERFEASFSYLQKQDVTMYVCDSQNFDFESIQLEASSNLKCYPTIDSIIAPSDI
HAIAYIHELHSQGKKIPQDVQIIGYDDILMSQFIYPSLSTIHQSSYLMGRYAAELVYTIASQLTVKANRIKLPVHYVERE
TIRKR

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=330, Percent_Identity=31.2121212121212, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1787948, Length=311, Percent_Identity=28.2958199356913, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1790369, Length=308, Percent_Identity=26.9480519480519, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1789068, Length=296, Percent_Identity=26.0135135135135, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1786540, Length=332, Percent_Identity=25.9036144578313, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1788474, Length=343, Percent_Identity=26.530612244898, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1789202, Length=304, Percent_Identity=25, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI48994940, Length=299, Percent_Identity=26.7558528428094, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1790715, Length=308, Percent_Identity=21.7532467532468, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786268, Length=292, Percent_Identity=25, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787580, Length=331, Percent_Identity=22.6586102719033, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787906, Length=270, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36548; Mature: 36548

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTIKQVAEEAGVSRSTVSRYISQKGYVSDDARHKIKAAIAKLHYTPNVLAQSLKTKKNQ
CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LVGLLLPDISNPFFPRLARGAEEYLKEKGYRVMLGNISDSEALEEEYVHVLLQSNAAGII
EEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEE
TTHDFTKRYPTLAIPVVVVDRVDQETQYGVFSDNRAGGLLAAQTVWQAGAKEVLLIRGPL
EECHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCC
DNAENINERFEASFSYLQKQDVTMYVCDSQNFDFESIQLEASSNLKCYPTIDSIIAPSDI
CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCCEEEECHHHHCCCCHH
HAIAYIHELHSQGKKIPQDVQIIGYDDILMSQFIYPSLSTIHQSSYLMGRYAAELVYTIA
HHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
SQLTVKANRIKLPVHYVERETIRKR
HHHEEEECEEEECHHHHHHHHHHCC
>Mature Secondary Structure
MVTIKQVAEEAGVSRSTVSRYISQKGYVSDDARHKIKAAIAKLHYTPNVLAQSLKTKKNQ
CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LVGLLLPDISNPFFPRLARGAEEYLKEKGYRVMLGNISDSEALEEEYVHVLLQSNAAGII
EEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEE
TTHDFTKRYPTLAIPVVVVDRVDQETQYGVFSDNRAGGLLAAQTVWQAGAKEVLLIRGPL
EECHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCC
DNAENINERFEASFSYLQKQDVTMYVCDSQNFDFESIQLEASSNLKCYPTIDSIIAPSDI
CCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCCEEEECHHHHCCCCHH
HAIAYIHELHSQGKKIPQDVQIIGYDDILMSQFIYPSLSTIHQSSYLMGRYAAELVYTIA
HHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
SQLTVKANRIKLPVHYVERETIRKR
HHHEEEECEEEECHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]