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The map label for this gene is ywbD [H]

Identifier: 21910078

GI number: 21910078

Start: 596553

End: 597716

Strand: Direct

Name: ywbD [H]

Synonym: SpyM3_0542

Alternate gene names: 21910078

Gene position: 596553-597716 (Clockwise)

Preceding gene: 21910076

Following gene: 21910079

Centisome position: 31.39

GC content: 37.03

Gene sequence:

>1164_bases
ATGAATAAACTCTATATTGATTCTTTTGTCGAAAAGAAGCTGACAGCAGGGGTACAATTATTAGATGAAAAAGATTTTTC
TAATATAAAGGAAAAAAATCAGTTGGTTCAACTGGAGACCAAGTCCAATCGTCCCATTGGAACAGCATATATCTCTAAGC
AAAATAAAGGAATTGGTTGGTATCTAGGACCAGAAAAAATCGACTTGTCTATCTCTTATTTTGTTAGTCTATTTTCAGTT
GCTAAAGCCAAAAGACAAGATTTTGCTCAATCGGACGAGACCAATGCTTATCGCCTTTTTAATCAAGAAGGAGACGGTTT
TGGTGGAGTAACAATTGATCTTTATAAAGATTTTGCAGTCTTTTCATGGTACAATGCCTTTGTCTATGACAAAAAAGAAA
TGATTATGGAGGCTTTTCAACAGGTTTTTCCTGAAGTCAAAGGAGCTTATGAAAAGTGTCGCTTTAAAGGTCCAGATACT
GAAACTGCTCATCTGTATGGTGAGCTGGCACAAGAAACCTTTTCGATTTTAGAAAATGGCATAGCCTATCAAGTCTTCTT
GAATGAGGGCTTAATGACAGGTATTTTTCTAGACCAGCATGATGTTAGAAGAGCACTAGTAGATGGTTTAGCTATGGGCA
AGTCCCTTCTTAACCTATTTTCCTATACAGCTGCCTTTTCTGTAGCAGCTGCTATGGGTGGTGCTATCGAGACCACTTCT
GTGGACTTGGCTAAACGATCGAGAGAATTATCACTAGCTCATTTTGAGCATAACCAGTTAAACTTAGCCTCACATCATTT
TGTGGTGATGGATGTTTTTGAATACTTCAAATATGCCAAACGGAAAAAATTAATTTTTGATGTGATTGTGATTGACCCAC
CAAGCTTTGCTAGAAATAAAAAACAAACTTTCTCTGTGAGCAGGGACTACCACAAATTAATCACAGAGGCCTTGGACATA
TTGAGTCCTAAGGGAACTATTATAGCTTCAACAAATGCTGCTAATATGACTGTTAGCCAGTTCAAAAAGCAAATTATCAA
AGGATTTGGAAGTCGTCGTCCTGAGTCTATGACTCTCCAGCAGCTTCCGAGTGACTTTACTATCAATAAAGCAGATGAAA
GAAGTAACTATTTAAAGGTATTTACTATAAAGGTACGAGAATGA

Upstream 100 bases:

>100_bases
TAAAATCTCAGATTAAATTATACCAAAAATGTGAAGCTAATGCTTGTTGTAAGTTCAAATTTAGTAGGATTTTTTATCAG
ATTTTGTTATAATAAAAACT

Downstream 100 bases:

>100_bases
GAATTGTAGCACCAGTCATGCCAAGACATTTTGACGAGGCTCAAGCCATTGATATTTCTAAATATGAAGATGTTAATTTA
ATTGAATGGCGAGCAGACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MNKLYIDSFVEKKLTAGVQLLDEKDFSNIKEKNQLVQLETKSNRPIGTAYISKQNKGIGWYLGPEKIDLSISYFVSLFSV
AKAKRQDFAQSDETNAYRLFNQEGDGFGGVTIDLYKDFAVFSWYNAFVYDKKEMIMEAFQQVFPEVKGAYEKCRFKGPDT
ETAHLYGELAQETFSILENGIAYQVFLNEGLMTGIFLDQHDVRRALVDGLAMGKSLLNLFSYTAAFSVAAAMGGAIETTS
VDLAKRSRELSLAHFEHNQLNLASHHFVVMDVFEYFKYAKRKKLIFDVIVIDPPSFARNKKQTFSVSRDYHKLITEALDI
LSPKGTIIASTNAANMTVSQFKKQIIKGFGSRRPESMTLQQLPSDFTINKADERSNYLKVFTIKVRE

Sequences:

>Translated_387_residues
MNKLYIDSFVEKKLTAGVQLLDEKDFSNIKEKNQLVQLETKSNRPIGTAYISKQNKGIGWYLGPEKIDLSISYFVSLFSV
AKAKRQDFAQSDETNAYRLFNQEGDGFGGVTIDLYKDFAVFSWYNAFVYDKKEMIMEAFQQVFPEVKGAYEKCRFKGPDT
ETAHLYGELAQETFSILENGIAYQVFLNEGLMTGIFLDQHDVRRALVDGLAMGKSLLNLFSYTAAFSVAAAMGGAIETTS
VDLAKRSRELSLAHFEHNQLNLASHHFVVMDVFEYFKYAKRKKLIFDVIVIDPPSFARNKKQTFSVSRDYHKLITEALDI
LSPKGTIIASTNAANMTVSQFKKQIIKGFGSRRPESMTLQQLPSDFTINKADERSNYLKVFTIKVRE
>Mature_387_residues
MNKLYIDSFVEKKLTAGVQLLDEKDFSNIKEKNQLVQLETKSNRPIGTAYISKQNKGIGWYLGPEKIDLSISYFVSLFSV
AKAKRQDFAQSDETNAYRLFNQEGDGFGGVTIDLYKDFAVFSWYNAFVYDKKEMIMEAFQQVFPEVKGAYEKCRFKGPDT
ETAHLYGELAQETFSILENGIAYQVFLNEGLMTGIFLDQHDVRRALVDGLAMGKSLLNLFSYTAAFSVAAAMGGAIETTS
VDLAKRSRELSLAHFEHNQLNLASHHFVVMDVFEYFKYAKRKKLIFDVIVIDPPSFARNKKQTFSVSRDYHKLITEALDI
LSPKGTIIASTNAANMTVSQFKKQIIKGFGSRRPESMTLQQLPSDFTINKADERSNYLKVFTIKVRE

Specific function: Unknown

COG id: COG1092

COG function: function code R; Predicted SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

Organism=Escherichia coli, GI145693111, Length=292, Percent_Identity=32.1917808219178, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1787181, Length=298, Percent_Identity=26.8456375838926, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR019614 [H]

Pfam domain/function: PF10672 Methyltrans_SAM [H]

EC number: NA

Molecular weight: Translated: 43941; Mature: 43941

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS00572 GLYCOSYL_HYDROL_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLYIDSFVEKKLTAGVQLLDEKDFSNIKEKNQLVQLETKSNRPIGTAYISKQNKGIGW
CCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHCCEEEEEECCCCCEEEEEEECCCCCCEE
YLGPEKIDLSISYFVSLFSVAKAKRQDFAQSDETNAYRLFNQEGDGFGGVTIDLYKDFAV
EECCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEHHHHHH
FSWYNAFVYDKKEMIMEAFQQVFPEVKGAYEKCRFKGPDTETAHLYGELAQETFSILENG
HHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC
IAYQVFLNEGLMTGIFLDQHDVRRALVDGLAMGKSLLNLFSYTAAFSVAAAMGGAIETTS
CEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECH
VDLAKRSRELSLAHFEHNQLNLASHHFVVMDVFEYFKYAKRKKLIFDVIVIDPPSFARNK
HHHHHHCCCCEEEEECCCCEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHCCC
KQTFSVSRDYHKLITEALDILSPKGTIIASTNAANMTVSQFKKQIIKGFGSRRPESMTLQ
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHH
QLPSDFTINKADERSNYLKVFTIKVRE
HCCCCCCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MNKLYIDSFVEKKLTAGVQLLDEKDFSNIKEKNQLVQLETKSNRPIGTAYISKQNKGIGW
CCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHCCEEEEEECCCCCEEEEEEECCCCCCEE
YLGPEKIDLSISYFVSLFSVAKAKRQDFAQSDETNAYRLFNQEGDGFGGVTIDLYKDFAV
EECCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEHHHHHH
FSWYNAFVYDKKEMIMEAFQQVFPEVKGAYEKCRFKGPDTETAHLYGELAQETFSILENG
HHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC
IAYQVFLNEGLMTGIFLDQHDVRRALVDGLAMGKSLLNLFSYTAAFSVAAAMGGAIETTS
CEEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECH
VDLAKRSRELSLAHFEHNQLNLASHHFVVMDVFEYFKYAKRKKLIFDVIVIDPPSFARNK
HHHHHHCCCCEEEEECCCCEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHCCC
KQTFSVSRDYHKLITEALDILSPKGTIIASTNAANMTVSQFKKQIIKGFGSRRPESMTLQ
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHH
QLPSDFTINKADERSNYLKVFTIKVRE
HCCCCCCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]