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The map label for this gene is atpD [H]

Identifier: 21910035

GI number: 21910035

Start: 550097

End: 551503

Strand: Direct

Name: atpD [H]

Synonym: SpyM3_0499

Alternate gene names: 21910035

Gene position: 550097-551503 (Clockwise)

Preceding gene: 21910034

Following gene: 21910036

Centisome position: 28.94

GC content: 42.86

Gene sequence:

>1407_bases
ATGAGCTCAGGCAAAATTGCTCAGGTTGTTGGTCCAGTAGTAGACGTCATGTTTGCTAGTGGGGACAAACTTCCAGAGAT
TAATAATGCATTGATTGTTTATAAAGATAGTGATAAAAAGCAAAAAATCGTCCTTGAAGTTGCTCTGGAACTTGGTGACG
GTATGGTGCGAACAATCGCTATGGAATCAACTGATGGGCTTACACGTGGGTTAGAAGTTCTTGACACTGGTCGTGCGATT
AGCGTACCAGTAGGTAAAGAAACTTTGGGACGCGTCTTTAATGTACTTGGAGAAACCATTGATTTGGAAGAACCATTTGC
AGAAGATGTTGACCGTCAGCCGATCCATAAAAAAGCACCATCGTTTGATGAATTATCAACATCATCAGAAATTCTTGAAA
CTGGTATCAAGGTAATTGACCTTCTTGCCCCTTACCTTAAAGGTGGTAAAGTTGGACTTTTCGGTGGTGCCGGAGTTGGT
AAGACTGTCCTTATCCAAGAATTAATCCACAATATCGCCCAAGAACACGGAGGTATTTCAGTATTTACCGGTGTTGGTGA
GCGAACACGTGAAGGAAATGACCTTTACTGGGAAATGAAAGAATCAGGCGTTATTGAAAAAACCGCCATGGTTTTTGGTC
AGATGAATGAGCCGCCTGGGGCACGTATGCGTGTAGCCCTTACTGGTTTAACCATTGCTGAGTATTTCCGTGATGTAGAA
GGCCAAGATGTTTTGCTCTTTATTGATAATATCTTCCGTTTCACTCAGGCAGGTTCAGAAGTATCAGCCCTCTTAGGCCG
TATGCCTTCTGCTGTTGGTTACCAACCAACACTTGCTACTGAAATGGGGCAATTGCAAGAACGGATTACATCAACTCAAA
AAGGTTCTGTTACATCTATCCAAGCGATTTATGTACCAGCAGATGATTATACTGACCCTGCGCCAGCAACAGCATTTGCT
CACCTGGATTCAACAACTAACCTTGAACGTAAATTGACTCAAATGGGTATTTACCCTGCGGTTGATCCATTGGCTTCAAG
TTCACGGGCTTTATCACCTGAGATTGTTGGTGAAGAGCACTATGCTGTGGCAACAGAAGTTCAACGTGTGCTTCAACGCT
ACCGTGAATTACAAGACATCATCGCTATTTTGGGGATGGATGAATTATCAGATGAAGAAAAAACATTGGTTGGACGTGCG
CGTCGTATCCAGTTCTTCCTCTCACAAAATTTTAACGTTGCTGAACAATTTACCGGTCTTCCTGGTTCTTACGTGCCAGT
TGCTGAGACAGTTCGCGGCTTTAAAGAAATTCTTGAAGGAAAATACGATGATCTTCCAGAAGACGCCTTTCGTTCAGTTG
GTCCAATCGAGGATGTGATTAAAAAAGCCGAAAAAATGGGCTTTTAG

Upstream 100 bases:

>100_bases
ATGACTTATGGGACTTTTCTATTGAAAGACTGCTCTTTTCAGTATAAAAGAAGTTAGCAAGACTAACTAAGCCCTGACTA
TCGAATATAAGGAGAAATGA

Downstream 100 bases:

>100_bases
TGAGGTGATGCCATGACACAAATGACTGTTCAAGTGGTAACGCCAGATGGAATCAAATATGATCACCATGCTAAATGTAT
TTCTGTAACAACACCAGATG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MSSGKIAQVVGPVVDVMFASGDKLPEINNALIVYKDSDKKQKIVLEVALELGDGMVRTIAMESTDGLTRGLEVLDTGRAI
SVPVGKETLGRVFNVLGETIDLEEPFAEDVDRQPIHKKAPSFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVG
KTVLIQELIHNIAQEHGGISVFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE
GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTQKGSVTSIQAIYVPADDYTDPAPATAFA
HLDSTTNLERKLTQMGIYPAVDPLASSSRALSPEIVGEEHYAVATEVQRVLQRYRELQDIIAILGMDELSDEEKTLVGRA
RRIQFFLSQNFNVAEQFTGLPGSYVPVAETVRGFKEILEGKYDDLPEDAFRSVGPIEDVIKKAEKMGF

Sequences:

>Translated_468_residues
MSSGKIAQVVGPVVDVMFASGDKLPEINNALIVYKDSDKKQKIVLEVALELGDGMVRTIAMESTDGLTRGLEVLDTGRAI
SVPVGKETLGRVFNVLGETIDLEEPFAEDVDRQPIHKKAPSFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVG
KTVLIQELIHNIAQEHGGISVFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE
GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTQKGSVTSIQAIYVPADDYTDPAPATAFA
HLDSTTNLERKLTQMGIYPAVDPLASSSRALSPEIVGEEHYAVATEVQRVLQRYRELQDIIAILGMDELSDEEKTLVGRA
RRIQFFLSQNFNVAEQFTGLPGSYVPVAETVRGFKEILEGKYDDLPEDAFRSVGPIEDVIKKAEKMGF
>Mature_467_residues
SSGKIAQVVGPVVDVMFASGDKLPEINNALIVYKDSDKKQKIVLEVALELGDGMVRTIAMESTDGLTRGLEVLDTGRAIS
VPVGKETLGRVFNVLGETIDLEEPFAEDVDRQPIHKKAPSFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGK
TVLIQELIHNIAQEHGGISVFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVEG
QDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTQKGSVTSIQAIYVPADDYTDPAPATAFAH
LDSTTNLERKLTQMGIYPAVDPLASSSRALSPEIVGEEHYAVATEVQRVLQRYRELQDIIAILGMDELSDEEKTLVGRAR
RIQFFLSQNFNVAEQFTGLPGSYVPVAETVRGFKEILEGKYDDLPEDAFRSVGPIEDVIKKAEKMGF

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=471, Percent_Identity=66.8789808917197, Blast_Score=619, Evalue=1e-177,
Organism=Homo sapiens, GI19913424, Length=323, Percent_Identity=27.5541795665635, Blast_Score=123, Evalue=4e-28,
Organism=Homo sapiens, GI19913428, Length=412, Percent_Identity=24.5145631067961, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI19913426, Length=418, Percent_Identity=24.6411483253589, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI50345984, Length=397, Percent_Identity=26.7002518891688, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI4757810, Length=397, Percent_Identity=26.7002518891688, Blast_Score=96, Evalue=5e-20,
Organism=Escherichia coli, GI1790170, Length=466, Percent_Identity=65.2360515021459, Blast_Score=604, Evalue=1e-174,
Organism=Escherichia coli, GI1788251, Length=402, Percent_Identity=27.8606965174129, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1790172, Length=350, Percent_Identity=27.7142857142857, Blast_Score=111, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI25144756, Length=471, Percent_Identity=64.755838641189, Blast_Score=598, Evalue=1e-171,
Organism=Caenorhabditis elegans, GI17565854, Length=355, Percent_Identity=29.0140845070423, Blast_Score=132, Evalue=6e-31,
Organism=Caenorhabditis elegans, GI17570191, Length=409, Percent_Identity=24.4498777506112, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17510931, Length=337, Percent_Identity=24.0356083086053, Blast_Score=105, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI71988080, Length=363, Percent_Identity=25.8953168044077, Blast_Score=93, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71988063, Length=363, Percent_Identity=25.8953168044077, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=391, Percent_Identity=24.0409207161125, Blast_Score=79, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6322581, Length=463, Percent_Identity=69.1144708423326, Blast_Score=626, Evalue=1e-180,
Organism=Saccharomyces cerevisiae, GI6319603, Length=417, Percent_Identity=25.4196642685851, Blast_Score=110, Evalue=5e-25,
Organism=Saccharomyces cerevisiae, GI6319370, Length=378, Percent_Identity=27.7777777777778, Blast_Score=100, Evalue=5e-22,
Organism=Saccharomyces cerevisiae, GI6320016, Length=263, Percent_Identity=26.2357414448669, Blast_Score=87, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24638766, Length=471, Percent_Identity=66.6666666666667, Blast_Score=615, Evalue=1e-176,
Organism=Drosophila melanogaster, GI28574560, Length=469, Percent_Identity=64.818763326226, Blast_Score=584, Evalue=1e-167,
Organism=Drosophila melanogaster, GI20129479, Length=347, Percent_Identity=27.0893371757925, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24583988, Length=375, Percent_Identity=26.9333333333333, Blast_Score=125, Evalue=8e-29,
Organism=Drosophila melanogaster, GI24583986, Length=375, Percent_Identity=26.9333333333333, Blast_Score=125, Evalue=8e-29,
Organism=Drosophila melanogaster, GI24583984, Length=375, Percent_Identity=26.9333333333333, Blast_Score=125, Evalue=8e-29,
Organism=Drosophila melanogaster, GI24583992, Length=369, Percent_Identity=27.6422764227642, Blast_Score=124, Evalue=2e-28,
Organism=Drosophila melanogaster, GI281361666, Length=405, Percent_Identity=24.9382716049383, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24646341, Length=405, Percent_Identity=24.9382716049383, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI17136796, Length=405, Percent_Identity=24.9382716049383, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24658560, Length=364, Percent_Identity=27.4725274725275, Blast_Score=96, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24638768, Length=96, Percent_Identity=55.2083333333333, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 51056; Mature: 50925

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSGKIAQVVGPVVDVMFASGDKLPEINNALIVYKDSDKKQKIVLEVALELGDGMVRTIA
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEE
MESTDGLTRGLEVLDTGRAISVPVGKETLGRVFNVLGETIDLEEPFAEDVDRQPIHKKAP
ECCCCCHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHCCC
SFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGIS
CHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEE
VFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE
EEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCCC
GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTQKGSVTSI
CCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
QAIYVPADDYTDPAPATAFAHLDSTTNLERKLTQMGIYPAVDPLASSSRALSPEIVGEEH
EEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCH
YAVATEVQRVLQRYRELQDIIAILGMDELSDEEKTLVGRARRIQFFLSQNFNVAEQFTGL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
PGSYVPVAETVRGFKEILEGKYDDLPEDAFRSVGPIEDVIKKAEKMGF
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SSGKIAQVVGPVVDVMFASGDKLPEINNALIVYKDSDKKQKIVLEVALELGDGMVRTIA
CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEE
MESTDGLTRGLEVLDTGRAISVPVGKETLGRVFNVLGETIDLEEPFAEDVDRQPIHKKAP
ECCCCCHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHCCC
SFDELSTSSEILETGIKVIDLLAPYLKGGKVGLFGGAGVGKTVLIQELIHNIAQEHGGIS
CHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEE
VFTGVGERTREGNDLYWEMKESGVIEKTAMVFGQMNEPPGARMRVALTGLTIAEYFRDVE
EEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCCC
GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTQKGSVTSI
CCEEEEEHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
QAIYVPADDYTDPAPATAFAHLDSTTNLERKLTQMGIYPAVDPLASSSRALSPEIVGEEH
EEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCH
YAVATEVQRVLQRYRELQDIIAILGMDELSDEEKTLVGRARRIQFFLSQNFNVAEQFTGL
HHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
PGSYVPVAETVRGFKEILEGKYDDLPEDAFRSVGPIEDVIKKAEKMGF
CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA