Click here to switch to the map view.

The map label for this gene is yrrO [H]

Identifier: 21909954

GI number: 21909954

Start: 457991

End: 459277

Strand: Direct

Name: yrrO [H]

Synonym: SpyM3_0418

Alternate gene names: 21909954

Gene position: 457991-459277 (Clockwise)

Preceding gene: 21909953

Following gene: 21909955

Centisome position: 24.1

GC content: 44.91

Gene sequence:

>1287_bases
ATGTCACATATGAAAAAACGTCCCGAGGTCTTATCACCTGCTGGAACACTTGAAAAATTAAAAGTTGCGATTGACTATGG
CGCAGATGCTGTTTTTGTTGGAGGGCAGGCCTATGGCCTAAGAAGCCGCGCTGGTAACTTCTCTATGGAAGAATTGCAAG
AAGGCATTGATTATGCACATGCGCGTGGAGCTAAGGTCTATGTTGCTGCTAACATGGTTACCCACGAAGGGAACGAAATT
GGTGCGGGCGAGTGGTTTCGTCAACTGCGTGATATGGGGCTTGATGCGGTCATTGTTTCAGATCCAGCCTTGATTGTTAT
TTGTTCAACAGAAGCCCCAGGTTTGGAAATTCATTTGTCAACGCAAGCTTCATCTACCAATTACGAGACCTTTGAATTTT
GGAAAGCCATGGGCTTGACACGTGTTGTTTTAGCTCGCGAGGTTAATATGGCCGAGTTAGCAGAAATCCGTAAGCGGACA
GATGTGGAAATTGAAGCCTTTGTCCATGGAGCCATGTGTATTTCTTATTCAGGCCGCTGTGTTTTGTCAAACCACATGAG
TCACCGTGATGCCAACAGGGGCGGCTGCTCACAGTCTTGCCGCTGGAAGTATGATTTGTATGACATGCCATTTGGAGGAG
AGCGCCACTCCTTAAAAGGGGAAATTCCAGAAGACTATTCTATGTCCTCTGTTGACATGTGTATGATTGACCATATTCCT
GACCTGATTGAAAATGGGGTTGATAGCTTAAAAATTGAAGGCCGAATGAAATCTATCCACTACGTCTCAACCGTAACCAA
CTGTTACAAGGCGGCTGTAGATGCTTACATGGAAAGCCCAGAAGCTTTTTATGCTATCAAAGAGGAATTGATTGACGAGT
TGTGGAAGGTTGCCCAGCGCGAGTTGGCTACAGGTTTTTACTATGGTATCCCAACTGAAAATGAACAATTATTTGGTGCT
CGCCGCAAAATTCCACAATACAAATTTGTCGGAGAAGTAGTTGCCTTTGACTCAGCTAGCATGACAGCGACCATTCGTCA
GCGTAATGTCATCATGGAAGGCGATCGGATTGAATGTTATGGACCAGGTTTCCGTCATTTTGAAACGGTTGTTAAGGACT
TACATGATGCGGATGGCCAAAAGATTGACCGTGCCCCAAATCCAATGGAACTCTTAACCATCTCTTTACCGAGAGAAGTT
AAGCCAGGGGATATGATTAGGGCTTGCAAGGAAGGTCTTGTCAACCTCTATCAAAAAGATGGCACCAGTAAAACTGTTAG
AACATAG

Upstream 100 bases:

>100_bases
TAATCCTTGTCTTGAGTGAGTTTACTATTTCAGGGCAAGACAGGGTTATGACACCATTACACAGGTAATCTACCTATCTT
GAAAATAGAAAGAATATCAC

Downstream 100 bases:

>100_bases
TAACAAGAAATACTAGAGGCCCTCTTTTTCCAAATGGTATACGACCATAGTTGGGAAAAGAGAGCCTGTTTTTTTTGAAA
ATTGGATATCACAATAGCTT

Product: putative protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MSHMKKRPEVLSPAGTLEKLKVAIDYGADAVFVGGQAYGLRSRAGNFSMEELQEGIDYAHARGAKVYVAANMVTHEGNEI
GAGEWFRQLRDMGLDAVIVSDPALIVICSTEAPGLEIHLSTQASSTNYETFEFWKAMGLTRVVLAREVNMAELAEIRKRT
DVEIEAFVHGAMCISYSGRCVLSNHMSHRDANRGGCSQSCRWKYDLYDMPFGGERHSLKGEIPEDYSMSSVDMCMIDHIP
DLIENGVDSLKIEGRMKSIHYVSTVTNCYKAAVDAYMESPEAFYAIKEELIDELWKVAQRELATGFYYGIPTENEQLFGA
RRKIPQYKFVGEVVAFDSASMTATIRQRNVIMEGDRIECYGPGFRHFETVVKDLHDADGQKIDRAPNPMELLTISLPREV
KPGDMIRACKEGLVNLYQKDGTSKTVRT

Sequences:

>Translated_428_residues
MSHMKKRPEVLSPAGTLEKLKVAIDYGADAVFVGGQAYGLRSRAGNFSMEELQEGIDYAHARGAKVYVAANMVTHEGNEI
GAGEWFRQLRDMGLDAVIVSDPALIVICSTEAPGLEIHLSTQASSTNYETFEFWKAMGLTRVVLAREVNMAELAEIRKRT
DVEIEAFVHGAMCISYSGRCVLSNHMSHRDANRGGCSQSCRWKYDLYDMPFGGERHSLKGEIPEDYSMSSVDMCMIDHIP
DLIENGVDSLKIEGRMKSIHYVSTVTNCYKAAVDAYMESPEAFYAIKEELIDELWKVAQRELATGFYYGIPTENEQLFGA
RRKIPQYKFVGEVVAFDSASMTATIRQRNVIMEGDRIECYGPGFRHFETVVKDLHDADGQKIDRAPNPMELLTISLPREV
KPGDMIRACKEGLVNLYQKDGTSKTVRT
>Mature_427_residues
SHMKKRPEVLSPAGTLEKLKVAIDYGADAVFVGGQAYGLRSRAGNFSMEELQEGIDYAHARGAKVYVAANMVTHEGNEIG
AGEWFRQLRDMGLDAVIVSDPALIVICSTEAPGLEIHLSTQASSTNYETFEFWKAMGLTRVVLAREVNMAELAEIRKRTD
VEIEAFVHGAMCISYSGRCVLSNHMSHRDANRGGCSQSCRWKYDLYDMPFGGERHSLKGEIPEDYSMSSVDMCMIDHIPD
LIENGVDSLKIEGRMKSIHYVSTVTNCYKAAVDAYMESPEAFYAIKEELIDELWKVAQRELATGFYYGIPTENEQLFGAR
RKIPQYKFVGEVVAFDSASMTATIRQRNVIMEGDRIECYGPGFRHFETVVKDLHDADGQKIDRAPNPMELLTISLPREVK
PGDMIRACKEGLVNLYQKDGTSKTVRT

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1788397, Length=437, Percent_Identity=33.6384439359268, Blast_Score=227, Evalue=1e-60,
Organism=Escherichia coli, GI87081910, Length=280, Percent_Identity=37.5, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI1789548, Length=309, Percent_Identity=31.7152103559871, Blast_Score=141, Evalue=7e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 47894; Mature: 47763

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHMKKRPEVLSPAGTLEKLKVAIDYGADAVFVGGQAYGLRSRAGNFSMEELQEGIDYAH
CCCCCCCCCCCCCCCCHHHEEEEEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
ARGAKVYVAANMVTHEGNEIGAGEWFRQLRDMGLDAVIVSDPALIVICSTEAPGLEIHLS
CCCCEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCEEEEEE
TQASSTNYETFEFWKAMGLTRVVLAREVNMAELAEIRKRTDVEIEAFVHGAMCISYSGRC
CCCCCCCCHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHCCCEEEHHEEEEEEEECCCCE
VLSNHMSHRDANRGGCSQSCRWKYDLYDMPFGGERHSLKGEIPEDYSMSSVDMCMIDHIP
EEECCCHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
DLIENGVDSLKIEGRMKSIHYVSTVTNCYKAAVDAYMESPEAFYAIKEELIDELWKVAQR
HHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ELATGFYYGIPTENEQLFGARRKIPQYKFVGEVVAFDSASMTATIRQRNVIMEGDRIECY
HHHCCEEECCCCCCHHHHHHHHCCCCHHHHHHHHEECCCCCEEEEECCCEEEECCEEEEE
GPGFRHFETVVKDLHDADGQKIDRAPNPMELLTISLPREVKPGDMIRACKEGLVNLYQKD
CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
GTSKTVRT
CCCCCCCC
>Mature Secondary Structure 
SHMKKRPEVLSPAGTLEKLKVAIDYGADAVFVGGQAYGLRSRAGNFSMEELQEGIDYAH
CCCCCCCCCCCCCCCHHHEEEEEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
ARGAKVYVAANMVTHEGNEIGAGEWFRQLRDMGLDAVIVSDPALIVICSTEAPGLEIHLS
CCCCEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCEEEEEECCCCCCEEEEEE
TQASSTNYETFEFWKAMGLTRVVLAREVNMAELAEIRKRTDVEIEAFVHGAMCISYSGRC
CCCCCCCCHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHCCCEEEHHEEEEEEEECCCCE
VLSNHMSHRDANRGGCSQSCRWKYDLYDMPFGGERHSLKGEIPEDYSMSSVDMCMIDHIP
EEECCCHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
DLIENGVDSLKIEGRMKSIHYVSTVTNCYKAAVDAYMESPEAFYAIKEELIDELWKVAQR
HHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ELATGFYYGIPTENEQLFGARRKIPQYKFVGEVVAFDSASMTATIRQRNVIMEGDRIECY
HHHCCEEECCCCCCHHHHHHHHCCCCHHHHHHHHEECCCCCEEEEECCCEEEECCEEEEE
GPGFRHFETVVKDLHDADGQKIDRAPNPMELLTISLPREVKPGDMIRACKEGLVNLYQKD
CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
GTSKTVRT
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]