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The map label for this gene is vicR [H]

Identifier: 21909908

GI number: 21909908

Start: 413432

End: 414142

Strand: Direct

Name: vicR [H]

Synonym: SpyM3_0372

Alternate gene names: 21909908

Gene position: 413432-414142 (Clockwise)

Preceding gene: 21909907

Following gene: 21909909

Centisome position: 21.75

GC content: 39.24

Gene sequence:

>711_bases
ATGAAAAAAATACTTATTGTGGATGATGAAAAACCGATTTCTGACATTATTAAGTTTAATTTGACAAAAGAAGGTTATGA
CATTGTTACAGCTTTTGATGGACGCGAAGCGGTAACAATTTTTGAAGAAGAAAAGCCAGATTTAATTATTCTTGATTTGA
TGCTCCCTGAGTTGGACGGTCTTGAAGTAGCCAAGGAAATTCGTAAAACCAGTCATGTCCCGATTATTATGTTGTCGGCT
AAAGATAGTGAGTTTGACAAGGTTATTGGACTTGAAATTGGGGCTGATGATTACGTGACCAAGCCTTTTTCTAATCGGGA
ATTGCTGGCGCGTGTCAAGGCTCATCTGCGTCGTACCGAAACTATTGAAACGGCTGTTGCAGAAGAAAATGCTTCTTCAG
GTACACAGGAACTAACCATTGGTAATTTACAGATTTTACCAGATGCGTTTGTTGCTAAAAAACATGGTCAAGAGGTAGAG
TTGACCCATCGTGAATTTGAACTATTGCATCATCTAGCTAACCATATGGGTCAGGTGATGACACGAGAACACTTATTGGA
AATTGTTTGGGGATATGATTATTTTGGCGATGTGCGCACGGTTGATGTGACTGTTCGTCGTCTTCGTGAAAAAATTGAAG
ACACACCAAGTCGTCCTGAGTATATTTTAACAAGACGTGGTGTTGGGTACTACATGAAATCTTATGACTAG

Upstream 100 bases:

>100_bases
AGGTAGAAATAATTTAGAAAAATATAGTTTTGTGATTTTTTACTAACCACAAAAATCACAAATTGTAATATCAATTACAA
GAACTTTCTGAGGTATAGAC

Downstream 100 bases:

>100_bases
AGATATCATTGGAAACTTATCCACATTTGAATTAGCGATCCTTATCTTACTTGTTTTTGTTGCTTTTTACTTTATCCATC
TTGCGGTGCGTGATTACCGA

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHVPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVE
LTHREFELLHHLANHMGQVMTREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD

Sequences:

>Translated_236_residues
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHVPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVE
LTHREFELLHHLANHMGQVMTREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD
>Mature_236_residues
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHVPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVE
LTHREFELLHHLANHMGQVMTREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD

Specific function: Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH, ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF. Binds to the ftsAZ P1 promoter seque

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI2367329, Length=234, Percent_Identity=40.5982905982906, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=39.2070484581498, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI1789809, Length=232, Percent_Identity=36.2068965517241, Blast_Score=153, Evalue=8e-39,
Organism=Escherichia coli, GI1786599, Length=232, Percent_Identity=39.6551724137931, Blast_Score=153, Evalue=8e-39,
Organism=Escherichia coli, GI87082012, Length=228, Percent_Identity=35.9649122807018, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1788394, Length=230, Percent_Identity=38.695652173913, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1786911, Length=230, Percent_Identity=36.9565217391304, Blast_Score=140, Evalue=6e-35,
Organism=Escherichia coli, GI1786784, Length=235, Percent_Identity=35.7446808510638, Blast_Score=133, Evalue=9e-33,
Organism=Escherichia coli, GI1790860, Length=237, Percent_Identity=32.4894514767932, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI145693140, Length=237, Percent_Identity=32.0675105485232, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787229, Length=232, Percent_Identity=31.8965517241379, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1789402, Length=231, Percent_Identity=32.4675324675325, Blast_Score=117, Evalue=5e-28,
Organism=Escherichia coli, GI1790552, Length=231, Percent_Identity=33.3333333333333, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787375, Length=229, Percent_Identity=31.0043668122271, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI1788550, Length=109, Percent_Identity=34.8623853211009, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788905, Length=100, Percent_Identity=38, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1790437, Length=139, Percent_Identity=31.6546762589928, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787487, Length=102, Percent_Identity=31.3725490196078, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27084; Mature: 27084

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDG
CCEEEEEECCCCHHHHHEECCCCCCCEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCC
LEVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE
HHHHHHHHHHCCCCEEEEECCCCCCHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
TIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVM
HHHHHHHHCCCCCCCCEEEECCEEECCHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHH
TREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD
HHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCC
>Mature Secondary Structure
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDG
CCEEEEEECCCCHHHHHEECCCCCCCEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCC
LEVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE
HHHHHHHHHHCCCCEEEEECCCCCCHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
TIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVM
HHHHHHHHCCCCCCCCEEEECCEEECCHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHH
TREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD
HHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 9829949; 10878122 [H]