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The map label for this gene is araQ [H]

Identifier: 21909719

GI number: 21909719

Start: 211754

End: 212584

Strand: Direct

Name: araQ [H]

Synonym: SpyM3_0183

Alternate gene names: 21909719

Gene position: 211754-212584 (Clockwise)

Preceding gene: 21909718

Following gene: 21909720

Centisome position: 11.14

GC content: 41.28

Gene sequence:

>831_bases
ATGAAGAAAAAGAAACTAACCGCATCGGATGTTCTGACTACTGTTATTCTATGCATCTTGACCATTTTGTTTATTTTCCC
ATTTTATTGGATTATGACAGGAGCATTTAAGGCTCAAGCCGATACCATTATGATTCCACCGCAATGGTGGCCAAAGGCAC
CTACTATTGAAAATTTTAAGGCCTTGGTCATTCAAAATCCAGCCTTAAAATGGTTGTGGAATAGTGTCTTTATTTCGGTG
GTGACCATGTTTTTGGTTTGCGGAACCTCCTCGTTGGCAGGCTATGCTTTGGCCAAAAAGCGGTTTTATGGACAGCGGAT
TTTGTTTTCGATTTTTATTGCTGCCATGGCCTTGCCAAAACAGGTTGTTCTAGTACCTCTTGTGCGGATTGTTAATTTTA
TGGGAATCCATGACACTTTGGCGGCTGTTATTTTGCCTCTTGTGGGCTGGCCATTTGGTGTTTTCCTTATGAAACAGTTC
TCAGAAAATATTCCAACCGAGTTATTGGAATCCGCCAAGATTGATGGATGTGGCGAAATTCGTACCTTTTTCAATGTGGC
TTTCCCTATTGTCAAACCAGGCTTTGCAGCGCTAGCAATTTTTACCTTTATCAATACTTGGAATGATTATTTTATGCAGT
TGGTGATGTTAACCTCTCGGGAAAATTTAACGATTTCACTTGGGGTTGCCACTATGCAAGCTGAAATGGCTACTAATTAT
GGCTTGATTATGGCAGGGGCTGCCATGGCTGCAGTGCCTATTGTGACGGTATTTCTTGTCTTCCAAAAATCATTTACCCA
AGGCATTACTATGGGTGCTGTGAAAGGTTAG

Upstream 100 bases:

>100_bases
CAACACAATGGGTGTATTCTTGGCAGTCATGATTGCAATCATCAGCTTTGCTCAATTTAAAATTTTAGGTAATGATGTGG
AATATTAGGAGGATATTAAG

Downstream 100 bases:

>100_bases
ACTAAATAAAGCGTGTCGCTAAGCTTAATTTATAGGTTGCTTATTAATTTAGGTGCATACATAGATAAATCAGATGGGAA
GCAAGTCATGTGTTAAACGT

Product: N-acetylneuraminate transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MKKKKLTASDVLTTVILCILTILFIFPFYWIMTGAFKAQADTIMIPPQWWPKAPTIENFKALVIQNPALKWLWNSVFISV
VTMFLVCGTSSLAGYALAKKRFYGQRILFSIFIAAMALPKQVVLVPLVRIVNFMGIHDTLAAVILPLVGWPFGVFLMKQF
SENIPTELLESAKIDGCGEIRTFFNVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRENLTISLGVATMQAEMATNY
GLIMAGAAMAAVPIVTVFLVFQKSFTQGITMGAVKG

Sequences:

>Translated_276_residues
MKKKKLTASDVLTTVILCILTILFIFPFYWIMTGAFKAQADTIMIPPQWWPKAPTIENFKALVIQNPALKWLWNSVFISV
VTMFLVCGTSSLAGYALAKKRFYGQRILFSIFIAAMALPKQVVLVPLVRIVNFMGIHDTLAAVILPLVGWPFGVFLMKQF
SENIPTELLESAKIDGCGEIRTFFNVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRENLTISLGVATMQAEMATNY
GLIMAGAAMAAVPIVTVFLVFQKSFTQGITMGAVKG
>Mature_276_residues
MKKKKLTASDVLTTVILCILTILFIFPFYWIMTGAFKAQADTIMIPPQWWPKAPTIENFKALVIQNPALKWLWNSVFISV
VTMFLVCGTSSLAGYALAKKRFYGQRILFSIFIAAMALPKQVVLVPLVRIVNFMGIHDTLAAVILPLVGWPFGVFLMKQF
SENIPTELLESAKIDGCGEIRTFFNVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRENLTISLGVATMQAEMATNY
GLIMAGAAMAAVPIVTVFLVFQKSFTQGITMGAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=282, Percent_Identity=28.0141843971631, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1789860, Length=265, Percent_Identity=28.6792452830189, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1790464, Length=217, Percent_Identity=28.110599078341, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30591; Mature: 30591

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKKLTASDVLTTVILCILTILFIFPFYWIMTGAFKAQADTIMIPPQWWPKAPTIENFK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHCCC
ALVIQNPALKWLWNSVFISVVTMFLVCGTSSLAGYALAKKRFYGQRILFSIFIAAMALPK
EEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
QVVLVPLVRIVNFMGIHDTLAAVILPLVGWPFGVFLMKQFSENIPTELLESAKIDGCGEI
HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCCCCHHH
RTFFNVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRENLTISLGVATMQAEMATNY
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCC
GLIMAGAAMAAVPIVTVFLVFQKSFTQGITMGAVKG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKKKKLTASDVLTTVILCILTILFIFPFYWIMTGAFKAQADTIMIPPQWWPKAPTIENFK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHCCC
ALVIQNPALKWLWNSVFISVVTMFLVCGTSSLAGYALAKKRFYGQRILFSIFIAAMALPK
EEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
QVVLVPLVRIVNFMGIHDTLAAVILPLVGWPFGVFLMKQFSENIPTELLESAKIDGCGEI
HHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCCCCHHH
RTFFNVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRENLTISLGVATMQAEMATNY
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCC
GLIMAGAAMAAVPIVTVFLVFQKSFTQGITMGAVKG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]