Click here to switch to the map view.

The map label for this gene is sgbU [H]

Identifier: 21909675

GI number: 21909675

Start: 164204

End: 165067

Strand: Direct

Name: sgbU [H]

Synonym: SpyM3_0139

Alternate gene names: 21909675

Gene position: 164204-165067 (Clockwise)

Preceding gene: 21909674

Following gene: 21909676

Centisome position: 8.64

GC content: 41.9

Gene sequence:

>864_bases
ATGGCGCGTCCTATTGGTATTTATGAAAAAGCAACGCCAAAACAGTTTACCTGGCGTGAACGCTTGCAATTTGCAAAAGA
CTTAGGTTTTGATTTTGTGGAAATGTCTGTTGATGAATCAGATGCTCGCTTAGCGCGCTTAGAGTGGACTAAGGAAGAAC
GGCTTGATTTAGTGAAAGCCATTTATGAAACAGGCATTCGCATCCCGACCATTTGTTTTTCTGGTCATAGACGTTACCCA
CTAGGCTCAAATGATCCTGCTATTGAAGCCAAGTCCCTTAAACTGATGAAACAATGTATTGAATTGGCACAGGACTTAGG
CGTTCGTACCATTCAATTAGCTGGTTATGACGTTTACTATGAAGAAAAATCGCCTGAAACCCGTGCTCGTTTTATCAAAA
ACTTGAGACAATCTTGTGACTGGGCCGAAGAAGCCCAAGTGATGCTTTCTATTGAGATTATGGATGACCCTTTTATCAAC
TCTATTGAAAAATACTTGGCAGTTGAAAAAGAGATTGACTCGCCTTATCTCTTTGTTTATCCTGATGTAGGCAATGTTTC
TGCCTGGCATAATGATTTGTGGAGTGAATTTTACAATGGTCACAAGTCCATTGCAGCCCTCCACTTGAAAGATACTTATG
CTGTCACGGAAACCTCAAAAGGACAGTTTCGTGATGTGCCATTTGGTCAAGGTTGTGTGGACTGGCAAGAGCTGTTTGCG
GTCCTCAAGAAAACCAACTACAATGGGCCTTTTTTGATTGAAATGTGGTCAGAAAATTGTGACACGGTGGAGGAAACAAA
AGCTGCTATCAAAGAAGCTCAGGACTTCCTTTACCCACTTATTGAGAAAGCGGGGTTGGCATAA

Upstream 100 bases:

>100_bases
TTTACCTTTATCGCAGGGCGAGGCATTACTGAAGCAGAAGATCCTGCTGCAGCGGCGCGTGCCTTCAAAGATGAAATCAG
ACGTATCTGGGGGTAACTTT

Downstream 100 bases:

>100_bases
TATGGCGAAAAACTTGCAAGAAATGCGTGAACGTGTCTGTGCGGCTAACAAGTCTCTACCACAACACGGTCTTGTCAAAT
TTACGTGGGGCAATGTCTCT

Product: putative L-xylulose 5-phosphate 3-epimerase

Products: NA

Alternate protein names: HUMPI [H]

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MARPIGIYEKATPKQFTWRERLQFAKDLGFDFVEMSVDESDARLARLEWTKEERLDLVKAIYETGIRIPTICFSGHRRYP
LGSNDPAIEAKSLKLMKQCIELAQDLGVRTIQLAGYDVYYEEKSPETRARFIKNLRQSCDWAEEAQVMLSIEIMDDPFIN
SIEKYLAVEKEIDSPYLFVYPDVGNVSAWHNDLWSEFYNGHKSIAALHLKDTYAVTETSKGQFRDVPFGQGCVDWQELFA
VLKKTNYNGPFLIEMWSENCDTVEETKAAIKEAQDFLYPLIEKAGLA

Sequences:

>Translated_287_residues
MARPIGIYEKATPKQFTWRERLQFAKDLGFDFVEMSVDESDARLARLEWTKEERLDLVKAIYETGIRIPTICFSGHRRYP
LGSNDPAIEAKSLKLMKQCIELAQDLGVRTIQLAGYDVYYEEKSPETRARFIKNLRQSCDWAEEAQVMLSIEIMDDPFIN
SIEKYLAVEKEIDSPYLFVYPDVGNVSAWHNDLWSEFYNGHKSIAALHLKDTYAVTETSKGQFRDVPFGQGCVDWQELFA
VLKKTNYNGPFLIEMWSENCDTVEETKAAIKEAQDFLYPLIEKAGLA
>Mature_286_residues
ARPIGIYEKATPKQFTWRERLQFAKDLGFDFVEMSVDESDARLARLEWTKEERLDLVKAIYETGIRIPTICFSGHRRYPL
GSNDPAIEAKSLKLMKQCIELAQDLGVRTIQLAGYDVYYEEKSPETRARFIKNLRQSCDWAEEAQVMLSIEIMDDPFINS
IEKYLAVEKEIDSPYLFVYPDVGNVSAWHNDLWSEFYNGHKSIAALHLKDTYAVTETSKGQFRDVPFGQGCVDWQELFAV
LKKTNYNGPFLIEMWSENCDTVEETKAAIKEAQDFLYPLIEKAGLA

Specific function: Isomerization of D-arabino-6-hexulose 3-phosphate to D- fructose 6-phosphate [H]

COG id: COG3623

COG function: function code G; Putative L-xylulose-5-phosphate 3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HUMPI family [H]

Homologues:

Organism=Escherichia coli, GI1790641, Length=283, Percent_Identity=51.5901060070671, Blast_Score=308, Evalue=3e-85,
Organism=Escherichia coli, GI87082294, Length=282, Percent_Identity=51.7730496453901, Blast_Score=299, Evalue=1e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004560
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: 5.-.-.-

Molecular weight: Translated: 33100; Mature: 32969

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPIGIYEKATPKQFTWRERLQFAKDLGFDFVEMSVDESDARLARLEWTKEERLDLVKA
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCHHHHHHHHHH
IYETGIRIPTICFSGHRRYPLGSNDPAIEAKSLKLMKQCIELAQDLGVRTIQLAGYDVYY
HHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECEEEEE
EEKSPETRARFIKNLRQSCDWAEEAQVMLSIEIMDDPFINSIEKYLAVEKEIDSPYLFVY
CCCCCHHHHHHHHHHHHHCCHHHHCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEE
PDVGNVSAWHNDLWSEFYNGHKSIAALHLKDTYAVTETSKGQFRDVPFGQGCVDWQELFA
CCCCCCHHHHHHHHHHHHCCCHHEEEEEEECCEEEEECCCCCEECCCCCCCCCCHHHHHH
VLKKTNYNGPFLIEMWSENCDTVEETKAAIKEAQDFLYPLIEKAGLA
HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ARPIGIYEKATPKQFTWRERLQFAKDLGFDFVEMSVDESDARLARLEWTKEERLDLVKA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCHHHHHHHHHH
IYETGIRIPTICFSGHRRYPLGSNDPAIEAKSLKLMKQCIELAQDLGVRTIQLAGYDVYY
HHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECEEEEE
EEKSPETRARFIKNLRQSCDWAEEAQVMLSIEIMDDPFINSIEKYLAVEKEIDSPYLFVY
CCCCCHHHHHHHHHHHHHCCHHHHCEEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEE
PDVGNVSAWHNDLWSEFYNGHKSIAALHLKDTYAVTETSKGQFRDVPFGQGCVDWQELFA
CCCCCCHHHHHHHHHHHHCCCHHEEEEEEECCEEEEECCCCCEECCCCCCCCCCHHHHHH
VLKKTNYNGPFLIEMWSENCDTVEETKAAIKEAQDFLYPLIEKAGLA
HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]