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The map label for this gene is abgR [C]

Identifier: 21909643

GI number: 21909643

Start: 129700

End: 130611

Strand: Reverse

Name: abgR [C]

Synonym: SpyM3_0107

Alternate gene names: 21909643

Gene position: 130611-129700 (Counterclockwise)

Preceding gene: 21909647

Following gene: 21909641

Centisome position: 6.87

GC content: 36.4

Gene sequence:

>912_bases
ATGAATATTTCAAGCTTGGCTTATTTTATTGAGATTGTTAATTGTGACTTTAACTTAACCAAAGCAGCCCAAAAAAGTCA
TATTTCGCAACCCGCCCTTAGTAGTTATATCAAGACTATCGAAAAAGAAGAAGGAGTCGTTTTATTCCAGCGTCAAAAAG
GACGTCTAGTTGGACTAACCTCAGTCGGCGAACGCTTTTTTGAAAATGCTAAGGTGGTTATCGCATCACATGAGCAATTA
ATGGCTGATTTGCGGAGTGAATCCAAAAAATACAAAGGAGAAATTTCAATCGGTATTCCTCAACTCATCTCTGGCATTGT
TTTTTCTGAGCTCATTCCAAAACTCATCGAAGAAAATCCCGAAGTTAAATTTCATATTGTAGAAACGGGTGCTTATGAAC
TGCAAAAAAAACTGTTTCTAAAAGAAGTCGATTTTGCGATTTTATTAACACCCACTACACTAGATGCTACTATTGCTGAT
ATCGACATTCTCCTAAGAGATCAACTCTGCCTTTATATGAGTCACAAAACCTTTCAAGAGACGTTTGATAGTAATCCTAA
CATCTCTATCAAAGCATTACATCGTCAAAACTTAGTAACTTTTGATAAAACCTTTATGATTAATCATCAGCTTACCACCT
TATTTGAAGAAGCAAATAGTCTTCCTGTAGTCAAATGTTATTCTGCCTCGTGGGATTTTTTATTAAATTGCACGCGCTAT
TCCTCTTACCTAACAATCCTACCAAGACCTATTACTCATTTTGCTCATATGGACGGTTTAGTGGAGGTCCAACTGACCGA
ACATCCAAAATGGGAAGTTGTTCTAGCCTCTCTCAAGCACAATAAAACAAGCCATTTAAAACATTATATCAAGCACACCA
TCTTAGATTATTTCATGAACCAGCGCTTCTAA

Upstream 100 bases:

>100_bases
TATTGAAACGCTTACATTTTTATTATATAATGTGAACTATAATAAACAAATATCGTTTTTTTATATATGCTATAACTAAA
CGTTATCGAAAGAGGAAAAT

Downstream 100 bases:

>100_bases
TTGCTTGACTCAGACCTTAAAAAAAAACGCCTGAAGGAAACAATCCCAAGCGTTTCATATAGTTATTTCCTAAAATACAA
ATAGGTAAATGATGGCAATA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MNISSLAYFIEIVNCDFNLTKAAQKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLTSVGERFFENAKVVIASHEQL
MADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENPEVKFHIVETGAYELQKKLFLKEVDFAILLTPTTLDATIAD
IDILLRDQLCLYMSHKTFQETFDSNPNISIKALHRQNLVTFDKTFMINHQLTTLFEEANSLPVVKCYSASWDFLLNCTRY
SSYLTILPRPITHFAHMDGLVEVQLTEHPKWEVVLASLKHNKTSHLKHYIKHTILDYFMNQRF

Sequences:

>Translated_303_residues
MNISSLAYFIEIVNCDFNLTKAAQKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLTSVGERFFENAKVVIASHEQL
MADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENPEVKFHIVETGAYELQKKLFLKEVDFAILLTPTTLDATIAD
IDILLRDQLCLYMSHKTFQETFDSNPNISIKALHRQNLVTFDKTFMINHQLTTLFEEANSLPVVKCYSASWDFLLNCTRY
SSYLTILPRPITHFAHMDGLVEVQLTEHPKWEVVLASLKHNKTSHLKHYIKHTILDYFMNQRF
>Mature_303_residues
MNISSLAYFIEIVNCDFNLTKAAQKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLTSVGERFFENAKVVIASHEQL
MADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENPEVKFHIVETGAYELQKKLFLKEVDFAILLTPTTLDATIAD
IDILLRDQLCLYMSHKTFQETFDSNPNISIKALHRQNLVTFDKTFMINHQLTTLFEEANSLPVVKCYSASWDFLLNCTRY
SSYLTILPRPITHFAHMDGLVEVQLTEHPKWEVVLASLKHNKTSHLKHYIKHTILDYFMNQRF

Specific function: Could Be The Regulator Of The Abg Operon. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=299, Percent_Identity=24.4147157190635, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=265, Percent_Identity=25.2830188679245, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788297, Length=186, Percent_Identity=27.9569892473118, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787530, Length=243, Percent_Identity=22.6337448559671, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790399, Length=251, Percent_Identity=23.5059760956175, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34826; Mature: 34826

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS50931 HTH_LYSR ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISSLAYFIEIVNCDFNLTKAAQKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLT
CCHHHHEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEHH
SVGERFFENAKVVIASHEQLMADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENP
HHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCC
EVKFHIVETGAYELQKKLFLKEVDFAILLTPTTLDATIADIDILLRDQLCLYMSHKTFQE
CEEEEEEECCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TFDSNPNISIKALHRQNLVTFDKTFMINHQLTTLFEEANSLPVVKCYSASWDFLLNCTRY
HHCCCCCEEEEEECCCCCEEECCEEEECHHHHHHHHHCCCCCEEEEECCCCHHEEEHHHH
SSYLTILPRPITHFAHMDGLVEVQLTEHPKWEVVLASLKHNKTSHLKHYIKHTILDYFMN
CCEEEECCCHHHHHHHCCCEEEEEECCCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHH
QRF
CCC
>Mature Secondary Structure
MNISSLAYFIEIVNCDFNLTKAAQKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLT
CCHHHHEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEHH
SVGERFFENAKVVIASHEQLMADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENP
HHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCC
EVKFHIVETGAYELQKKLFLKEVDFAILLTPTTLDATIADIDILLRDQLCLYMSHKTFQE
CEEEEEEECCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TFDSNPNISIKALHRQNLVTFDKTFMINHQLTTLFEEANSLPVVKCYSASWDFLLNCTRY
HHCCCCCEEEEEECCCCCEEECCEEEECHHHHHHHHHCCCCCEEEEECCCCHHEEEHHHH
SSYLTILPRPITHFAHMDGLVEVQLTEHPKWEVVLASLKHNKTSHLKHYIKHTILDYFMN
CCEEEECCCHHHHHHHCCCEEEEEECCCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHH
QRF
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]