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The map label for this gene is yrdC

Identifier: 21672740

GI number: 21672740

Start: 544483

End: 545055

Strand: Reverse

Name: yrdC

Synonym: BUsg475

Alternate gene names: 21672740

Gene position: 545055-544483 (Counterclockwise)

Preceding gene: 21672741

Following gene: 21672739

Centisome position: 84.97

GC content: 29.32

Gene sequence:

>573_bases
ATGAGTAAAGATTATTTTTTAAGTTCATTAATTAAATGTATACGTAAGCTATACGATAAAAAAATCATTGCATATCCTAC
TGAAGCAATGTTTGGATTAGGATGTGATCCTACAAGCGAAAAAGCTGTTAAAAGATTATTAGATTTAAAGAAGAGAAGTA
TAAAAAAAGGATTAATACTAGTTGCTTCAAATTATAATCAGATCAAAATGTACATTAATGAAAGTAAATTATCTGCACAG
CAAAAAAAAACGATGTTTTTTCATTGGCCTGGACCTTATACATTTTTAGTTCCTGCGAATTCTTTAGTTCCTTGTTGGTT
GACTGGCCAGTTTGATACGATAGCGGTTCGTATAAGTGCTCATTTTAGTATAATTAAGTTATGTAATGTTTTTGGAAAAG
CACTGGTATCTACAAGTGCTAATATTTCAAATATGTCTCCGTGTCTTACTCGAGAAGATGTTTTAAAGGACTTTGGAAAA
GATTTTCCAGTATTGTATGGTCATATAGGAAATGAAAGTCATCCCTCTAAAATAATTAATATTGTTAATGGAAAATTAAT
TCGTTATGTGTAA

Upstream 100 bases:

>100_bases
TATTCCCGGATGTGAGGTTGTTTATAGAAAACTAGAAAATTTATTATTTAATTTTAAAAAAGAAATTGTTCATTAAATTT
TTATTATGAGAAGTTTTTTA

Downstream 100 bases:

>100_bases
ACTTGAAAAGTTTAATTACGCTTTGTTTGGAAATCCTATTGATCACAGTCAATCTCCTAAAATTCATAATTTTTTTGCTA
CACAAACAGGTATTTTGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MSKDYFLSSLIKCIRKLYDKKIIAYPTEAMFGLGCDPTSEKAVKRLLDLKKRSIKKGLILVASNYNQIKMYINESKLSAQ
QKKTMFFHWPGPYTFLVPANSLVPCWLTGQFDTIAVRISAHFSIIKLCNVFGKALVSTSANISNMSPCLTREDVLKDFGK
DFPVLYGHIGNESHPSKIINIVNGKLIRYV

Sequences:

>Translated_190_residues
MSKDYFLSSLIKCIRKLYDKKIIAYPTEAMFGLGCDPTSEKAVKRLLDLKKRSIKKGLILVASNYNQIKMYINESKLSAQ
QKKTMFFHWPGPYTFLVPANSLVPCWLTGQFDTIAVRISAHFSIIKLCNVFGKALVSTSANISNMSPCLTREDVLKDFGK
DFPVLYGHIGNESHPSKIINIVNGKLIRYV
>Mature_189_residues
SKDYFLSSLIKCIRKLYDKKIIAYPTEAMFGLGCDPTSEKAVKRLLDLKKRSIKKGLILVASNYNQIKMYINESKLSAQQ
KKTMFFHWPGPYTFLVPANSLVPCWLTGQFDTIAVRISAHFSIIKLCNVFGKALVSTSANISNMSPCLTREDVLKDFGKD
FPVLYGHIGNESHPSKIINIVNGKLIRYV

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=188, Percent_Identity=47.8723404255319, Blast_Score=205, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_BUCAP (Q8K977)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660807.1
- ProteinModelPortal:   Q8K977
- SMR:   Q8K977
- EnsemblBacteria:   EBBUCT00000000236
- GeneID:   1005575
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg475
- GeneTree:   EBGT00050000008012
- HOGENOM:   HBG738264
- OMA:   FGLGCNP
- ProtClustDB:   CLSK316289
- BioCyc:   BAPH198804:BUSG475-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 21459; Mature: 21327

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDYFLSSLIKCIRKLYDKKIIAYPTEAMFGLGCDPTSEKAVKRLLDLKKRSIKKGLIL
CCCHHHHHHHHHHHHHHHCCCEEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEE
VASNYNQIKMYINESKLSAQQKKTMFFHWPGPYTFLVPANSLVPCWLTGQFDTIAVRISA
EECCCCEEEEEEECHHHHHHHHCEEEEECCCCEEEEEECCCCCEEEEECCCEEEEEEEEH
HFSIIKLCNVFGKALVSTSANISNMSPCLTREDVLKDFGKDFPVLYGHIGNESHPSKIIN
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
IVNGKLIRYV
HHCCEEEECC
>Mature Secondary Structure 
SKDYFLSSLIKCIRKLYDKKIIAYPTEAMFGLGCDPTSEKAVKRLLDLKKRSIKKGLIL
CCHHHHHHHHHHHHHHHCCCEEECCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEE
VASNYNQIKMYINESKLSAQQKKTMFFHWPGPYTFLVPANSLVPCWLTGQFDTIAVRISA
EECCCCEEEEEEECHHHHHHHHCEEEEECCCCEEEEEECCCCCEEEEECCCEEEEEEEEH
HFSIIKLCNVFGKALVSTSANISNMSPCLTREDVLKDFGKDFPVLYGHIGNESHPSKIIN
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
IVNGKLIRYV
HHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438