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The map label for this gene is cspE

Identifier: 21672738

GI number: 21672738

Start: 539635

End: 539844

Strand: Reverse

Name: cspE

Synonym: BUsg473

Alternate gene names: 21672738

Gene position: 539844-539635 (Counterclockwise)

Preceding gene: 21672739

Following gene: 21672736

Centisome position: 84.16

GC content: 34.76

Gene sequence:

>210_bases
ATGTCCAAGATTAAAGGTAATGTTAAGTGGTTTAATGAGTCTAAAGGGTTTGGTTTTATTACTCCAGAAGATGGAAGTAA
AGATGTATTTGTTCACTTCTCAGCTATACAAAGTAATGGATTTAAAACTCTAGCAGAAGGTCAAAGTGTTGAATTTGAAA
TTACTGAGGGAGCAAAGGGGCCATCTGCTGCTAATGTTATTAGTCTATAG

Upstream 100 bases:

>100_bases
ATTATTTTTGATTTTTAATTTTTTATGATGAAAATCATTTATAATCATAAATGACACTTTTTTCAATTTAGTATATTTTT
TTCATGTGAAGGTAATATAG

Downstream 100 bases:

>100_bases
ATTTTTTTTTAAATAAAAAATAAAAATCTTTTTTAGTACGGCTCTTTATCGAGCTGTACTATTTAGGATCTTATATTTTT
TATAGAACCATTCTCACCAT

Product: cold shock protein CspE

Products: NA

Alternate protein names: CSP-E

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKGPSAANVISL

Sequences:

>Translated_69_residues
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKGPSAANVISL
>Mature_68_residues
SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKGPSAANVISL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Homo sapiens, GI34098946, Length=70, Percent_Identity=45.7142857142857, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI224586884, Length=70, Percent_Identity=45.7142857142857, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI224586882, Length=69, Percent_Identity=46.3768115942029, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI156415990, Length=68, Percent_Identity=44.1176470588235, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=94.2028985507246, Blast_Score=133, Evalue=3e-33,
Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=81.1594202898551, Blast_Score=118, Evalue=9e-29,
Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=69.1176470588235, Blast_Score=103, Evalue=2e-24,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=71.6417910447761, Blast_Score=101, Evalue=8e-24,
Organism=Escherichia coli, GI1787834, Length=68, Percent_Identity=70.5882352941177, Blast_Score=100, Evalue=3e-23,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=69.6969696969697, Blast_Score=97, Evalue=2e-22,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=52.3076923076923, Blast_Score=82, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17533635, Length=69, Percent_Identity=44.9275362318841, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17508335, Length=68, Percent_Identity=42.6470588235294, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17507385, Length=69, Percent_Identity=40.5797101449275, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=50.7936507936508, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSPE_BUCAI (P63237)

Other databases:

- EMBL:   BA000003
- RefSeq:   NP_240299.1
- ProteinModelPortal:   P63237
- SMR:   P63237
- EnsemblBacteria:   EBBUCT00000003257
- GeneID:   1109835
- GenomeReviews:   BA000003_GR
- KEGG:   buc:BU489
- GeneTree:   EBGT00050000008002
- HOGENOM:   HBG717773
- OMA:   WTKRTTI
- PhylomeDB:   P63237
- ProtClustDB:   PRK09507
- BioCyc:   BSP107806:BU489-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7411; Mature: 7280

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKG
CCCCCCCEEEEECCCCEEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEEECCCCCC
PSAANVISL
CCCCEEECC
>Mature Secondary Structure 
SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKG
CCCCCCEEEEECCCCEEEECCCCCCCEEEEEEEEECCCCCEECCCCCEEEEEECCCCCC
PSAANVISL
CCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077