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The map label for this gene is recD

Identifier: 21672705

GI number: 21672705

Start: 502034

End: 503842

Strand: Direct

Name: recD

Synonym: BUsg440

Alternate gene names: 21672705

Gene position: 502034-503842 (Clockwise)

Preceding gene: 21672704

Following gene: 21672707

Centisome position: 78.27

GC content: 20.01

Gene sequence:

>1809_bases
ATGAACATGTCTCATTTATTACAAAATTTCGCAAATAAAAAGATTATAACTTTAGTTGATTTTTATTTTTCGCAGTTTAT
TTCAAAAAAAAATTCTATTATTATGTTAATATCTGCTTGTGTAAGTTTTGAAAGTAAAAATGGTCATATTTTTTTACCAA
TTGAATATTTTGAAAAAAACTGCTTTTTTTCTATCTCAAATAAACAATTCATTAATAAAATTTTAAAATGTTTAAATAAA
AAGAAAATAAATTGGTCATTAGAATTGTCAGAACATATATCTTGCGGAGATGGTTCCATCATAACTCCTTTAGTATTTTA
TAAAGATAAAATATATCTTTATAAAATATGGAAAGCTGAAAAAAAAATATTAGAACGTTTATATGAAAAAAATCAATTTG
ATACAATTGATACACAACAATGTTTAAATATACTAAATAATTTATTTTCTAAAAAAAAACATGATCTTCAAAAAATAGCT
GTAATATTAACTTTAATAAATAACATTATTTTTATAACTGGAGGACCTGGAACTGGTAAAACTACTATAATATTAAAAAT
TATTATTGCTTTAATAAAAAATGCAAAAAAAAAAATAAAAATTCAATTGTCAGCGCCAACAGGAAAAGCTACAGAAAATT
TAATAGAAATATTGAATGATAAATGGTTGAATCGTTATCTTCTTAAAGAAGAAAAAAAACAATTTTCTTTCAACCCTATA
ATGACTATACATCAGTTATTAGGAATTTCAAAAAAATCTGAAAAAATTTTTTTTAACAAAAACAACCTGCTAATGATAGA
TATTTTAATTATTGATGAAGCATCTATGATAGATATTTTAATGATGAGTAATATATTGTCAGCACTTTCGAAAAAAACTA
AAATAATTTTTATTGGAGACCACAATCAATTAAAACCAGTAAAATCAAGTTCTATTTTGAAATATATTTGTAGTTATGCT
GAAGATGGGTACAGTTTAAAAACTCAATCTATTTTACAAGAAATTACACAAAATTCAATAATAAATTATAAAATAAATAA
AAAAAATACTTCTTATATAAGTGATAAAATATGTGTTCTGAAAAAGAGCTATCGATTTGAAAAAAAAACTGGAATATATA
TATTATCAAATGCAGTTTATAATAAAGAAACAAAAATTTTTGAAAAATTATTCAAAAACTCGATAGAAAACGTTTTTTTC
TATGAAATCAATTCTGAAATAGAATATAAAAAAATGATTAATATTATTATTAATAATAATAAAATATTTTGGAGAAAGAT
ATACGAAAAAAAAAATATAAAAGAAATAATAAAAACCTTTAAAAACCATCAAATATTATGTATTGTAAAAAACGGTTTTT
TTGGTGTAAATTTTATAAATAAGATTTTAGAAGAAGAAATGTATAAAAGAAATATTTTCAATAAACGCTTTTATATAAAT
AATAAGTTATGGTATATAGGAAAACCTATTATAATTACAGAAAATAATCAATGTCTAGGAATATTTAATGGTGAAATAGG
TATAACTAATCTTAGTCAAAAAAATACCTTACAGGTATCTTTTTTAAAGAAAGATAATTTTATTGAAAATATTCCCATAG
AAATATTAAAAAATTATAAAACTTCTTGGTCAATTACTGTACATAAAGCACAAGGTTCTGAATTTAATAATATAAGTCTA
ATACTGCCAAATAAAAATTTAAAAATTTTGAAAAAAGATATTTTGTATACTGGAATTACAAGAACTCGGAAACAATTAAA
TATTTTTTCAACAAAAGAAATATTTATTAAAACAGTCTTAAAAAATTAA

Upstream 100 bases:

>100_bases
GTATAAACGTAAAAGATAGTATCTTTTATATTCTTCCAGATTATTTGTTAATTAAAAAATTAACTAAATTAATTTTACAA
AAAAAATAGTTTAATGAAAA

Downstream 100 bases:

>100_bases
GATACTTTAAAAGTAATCATCTAAAATAAATCAATCATTAAAATTTTCGAACAACGTTGATAATTATACATTTTCTTTTT
ACTTTCAGGCAATATTTCAA

Product: exodeoxyribonuclease V 67 kDa polypeptide

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 602; Mature: 602

Protein sequence:

>602_residues
MNMSHLLQNFANKKIITLVDFYFSQFISKKNSIIMLISACVSFESKNGHIFLPIEYFEKNCFFSISNKQFINKILKCLNK
KKINWSLELSEHISCGDGSIITPLVFYKDKIYLYKIWKAEKKILERLYEKNQFDTIDTQQCLNILNNLFSKKKHDLQKIA
VILTLINNIIFITGGPGTGKTTIILKIIIALIKNAKKKIKIQLSAPTGKATENLIEILNDKWLNRYLLKEEKKQFSFNPI
MTIHQLLGISKKSEKIFFNKNNLLMIDILIIDEASMIDILMMSNILSALSKKTKIIFIGDHNQLKPVKSSSILKYICSYA
EDGYSLKTQSILQEITQNSIINYKINKKNTSYISDKICVLKKSYRFEKKTGIYILSNAVYNKETKIFEKLFKNSIENVFF
YEINSEIEYKKMINIIINNNKIFWRKIYEKKNIKEIIKTFKNHQILCIVKNGFFGVNFINKILEEEMYKRNIFNKRFYIN
NKLWYIGKPIIITENNQCLGIFNGEIGITNLSQKNTLQVSFLKKDNFIENIPIEILKNYKTSWSITVHKAQGSEFNNISL
ILPNKNLKILKKDILYTGITRTRKQLNIFSTKEIFIKTVLKN

Sequences:

>Translated_602_residues
MNMSHLLQNFANKKIITLVDFYFSQFISKKNSIIMLISACVSFESKNGHIFLPIEYFEKNCFFSISNKQFINKILKCLNK
KKINWSLELSEHISCGDGSIITPLVFYKDKIYLYKIWKAEKKILERLYEKNQFDTIDTQQCLNILNNLFSKKKHDLQKIA
VILTLINNIIFITGGPGTGKTTIILKIIIALIKNAKKKIKIQLSAPTGKATENLIEILNDKWLNRYLLKEEKKQFSFNPI
MTIHQLLGISKKSEKIFFNKNNLLMIDILIIDEASMIDILMMSNILSALSKKTKIIFIGDHNQLKPVKSSSILKYICSYA
EDGYSLKTQSILQEITQNSIINYKINKKNTSYISDKICVLKKSYRFEKKTGIYILSNAVYNKETKIFEKLFKNSIENVFF
YEINSEIEYKKMINIIINNNKIFWRKIYEKKNIKEIIKTFKNHQILCIVKNGFFGVNFINKILEEEMYKRNIFNKRFYIN
NKLWYIGKPIIITENNQCLGIFNGEIGITNLSQKNTLQVSFLKKDNFIENIPIEILKNYKTSWSITVHKAQGSEFNNISL
ILPNKNLKILKKDILYTGITRTRKQLNIFSTKEIFIKTVLKN
>Mature_602_residues
MNMSHLLQNFANKKIITLVDFYFSQFISKKNSIIMLISACVSFESKNGHIFLPIEYFEKNCFFSISNKQFINKILKCLNK
KKINWSLELSEHISCGDGSIITPLVFYKDKIYLYKIWKAEKKILERLYEKNQFDTIDTQQCLNILNNLFSKKKHDLQKIA
VILTLINNIIFITGGPGTGKTTIILKIIIALIKNAKKKIKIQLSAPTGKATENLIEILNDKWLNRYLLKEEKKQFSFNPI
MTIHQLLGISKKSEKIFFNKNNLLMIDILIIDEASMIDILMMSNILSALSKKTKIIFIGDHNQLKPVKSSSILKYICSYA
EDGYSLKTQSILQEITQNSIINYKINKKNTSYISDKICVLKKSYRFEKKTGIYILSNAVYNKETKIFEKLFKNSIENVFF
YEINSEIEYKKMINIIINNNKIFWRKIYEKKNIKEIIKTFKNHQILCIVKNGFFGVNFINKILEEEMYKRNIFNKRFYIN
NKLWYIGKPIIITENNQCLGIFNGEIGITNLSQKNTLQVSFLKKDNFIENIPIEILKNYKTSWSITVHKAQGSEFNNISL
ILPNKNLKILKKDILYTGITRTRKQLNIFSTKEIFIKTVLKN

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain

Homologues:

Organism=Escherichia coli, GI1789182, Length=608, Percent_Identity=29.9342105263158, Blast_Score=309, Evalue=4e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX5A_BUCAP (Q8K9A8)

Other databases:

- EMBL:   AE013218
- RefSeq:   NP_660772.1
- ProteinModelPortal:   Q8K9A8
- SMR:   Q8K9A8
- EnsemblBacteria:   EBBUCT00000000074
- GeneID:   1005725
- GenomeReviews:   AE013218_GR
- KEGG:   bas:BUsg440
- GeneTree:   EBGT00050000007711
- HOGENOM:   HBG482408
- OMA:   TAWAMTV
- ProtClustDB:   CLSK552876
- BioCyc:   BAPH198804:BUSG440-MONOMER
- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606
- InterPro:   IPR014021
- SMART:   SM00382
- TIGRFAMs:   TIGR01447

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1

EC number: =3.1.11.5

Molecular weight: Translated: 70409; Mature: 70409

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS51192 HELICASE_ATP_BIND_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMSHLLQNFANKKIITLVDFYFSQFISKKNSIIMLISACVSFESKNGHIFLPIEYFEKN
CCHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCEEEEEEHEECCC
CFFSISNKQFINKILKCLNKKKINWSLELSEHISCGDGSIITPLVFYKDKIYLYKIWKAE
CEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECEEEEECCEEEEEEEHHHH
KKILERLYEKNQFDTIDTQQCLNILNNLFSKKKHDLQKIAVILTLINNIIFITGGPGTGK
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC
TTIILKIIIALIKNAKKKIKIQLSAPTGKATENLIEILNDKWLNRYLLKEEKKQFSFNPI
HHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
MTIHQLLGISKKSEKIFFNKNNLLMIDILIIDEASMIDILMMSNILSALSKKTKIIFIGD
HHHHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEC
HNQLKPVKSSSILKYICSYAEDGYSLKTQSILQEITQNSIINYKINKKNTSYISDKICVL
CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHCCHHHEE
KKSYRFEKKTGIYILSNAVYNKETKIFEKLFKNSIENVFFYEINSEIEYKKMINIIINNN
HHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEECCC
KIFWRKIYEKKNIKEIIKTFKNHQILCIVKNGFFGVNFINKILEEEMYKRNIFNKRFYIN
EEEEEEHHHHCCHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
NKLWYIGKPIIITENNQCLGIFNGEIGITNLSQKNTLQVSFLKKDNFIENIPIEILKNYK
CEEEEECCEEEEECCCCEEEEECCCEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHCCC
TSWSITVHKAQGSEFNNISLILPNKNLKILKKDILYTGITRTRKQLNIFSTKEIFIKTVL
CEEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHCHHHHHHHHEECCHHHHHHHHHH
KN
CC
>Mature Secondary Structure
MNMSHLLQNFANKKIITLVDFYFSQFISKKNSIIMLISACVSFESKNGHIFLPIEYFEKN
CCHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCEEEEEEHEECCC
CFFSISNKQFINKILKCLNKKKINWSLELSEHISCGDGSIITPLVFYKDKIYLYKIWKAE
CEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECEEEEECCEEEEEEEHHHH
KKILERLYEKNQFDTIDTQQCLNILNNLFSKKKHDLQKIAVILTLINNIIFITGGPGTGK
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC
TTIILKIIIALIKNAKKKIKIQLSAPTGKATENLIEILNDKWLNRYLLKEEKKQFSFNPI
HHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
MTIHQLLGISKKSEKIFFNKNNLLMIDILIIDEASMIDILMMSNILSALSKKTKIIFIGD
HHHHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEC
HNQLKPVKSSSILKYICSYAEDGYSLKTQSILQEITQNSIINYKINKKNTSYISDKICVL
CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHCCHHHEE
KKSYRFEKKTGIYILSNAVYNKETKIFEKLFKNSIENVFFYEINSEIEYKKMINIIINNN
HHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEECCC
KIFWRKIYEKKNIKEIIKTFKNHQILCIVKNGFFGVNFINKILEEEMYKRNIFNKRFYIN
EEEEEEHHHHCCHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
NKLWYIGKPIIITENNQCLGIFNGEIGITNLSQKNTLQVSFLKKDNFIENIPIEILKNYK
CEEEEECCEEEEECCCCEEEEECCCEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHCCC
TSWSITVHKAQGSEFNNISLILPNKNLKILKKDILYTGITRTRKQLNIFSTKEIFIKTVL
CEEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHCHHHHHHHHEECCHHHHHHHHHH
KN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12089438