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The map label for this gene is yvoA [H]

Identifier: 30264906

GI number: 30264906

Start: 4617679

End: 4618392

Strand: Reverse

Name: yvoA [H]

Synonym: BA_5096

Alternate gene names: 30264906

Gene position: 4618392-4617679 (Counterclockwise)

Preceding gene: 30264907

Following gene: 30264905

Centisome position: 88.35

GC content: 36.41

Gene sequence:

>714_bases
GTGAACGTAACGAGGAAAAAAGGACCATTATATTTACAAATAAAAAACATTATTCGTGATCGAATATTGCATGGTGTATA
TGCAATTCATACGAATATTCCTTCCGAACCGCAGTTAGAAGAAGAGTTCAAAGTGAGTAAAATTACAGTACGAAATGCGA
TTAAAGAACTCGCTCAAGAAGGATATTTAGAAAAGAAAAGCGGTAAAGGAACGAAAGTCATCCGCAATACTTCTGCGACA
AAACTGTCAAAGGGAAAGAAATTTACTGAAGTGTTAGTGGAAGAAGGCTATAAAGTACAGAAGAAATTGTTAAAAGCAGA
AATCGTTCAGAATGAAGAAGGAACAGTGCTATTTCGATTATTCGGTAAAGAGAGTTTTCGTATTGAACGTTTATATACGT
TAAATGATGCACCGTATATTCATTATACGCACTATTTTTCAGCGAAAATGGCAAGTACAGATTTATCGGACTTTGACTTG
CAATCGCTTTACGATTTAGTCGAGGACCGAGGCATTCATTTAGAAAACTTCAGAGATGAATTTGCTGTTGGACTTGCGCC
TAGTTTCGTTGCAGAAGCGTTAGGTGAAAAAGAGGGGACAGCGCTATTAAAACGTATGCGTTATTCTTACGATGAAGTTG
GCGAAGTAATTGAATACAGCGAAGGCTACTACAATACAGAAATGCAGCATTATGTAGTGAATTATGACGTATAA

Upstream 100 bases:

>100_bases
CACATACAATCGTCGGTGATACGCCAATGTCATCAGAGAAGGATATACTTCGGGCAATGACGGCATCAGTAGGTGATGTA
GAAAGGTAGTGGGTGTAACG

Downstream 100 bases:

>100_bases
AAAAGAGGGGATTTTCCCTCTTTTTTTATAAAGTAAGGGGAATGGGAGATGGATATATACTTATTAATCGTCACATTACT
TGCAATTGCAATTGTCATTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MNVTRKKGPLYLQIKNIIRDRILHGVYAIHTNIPSEPQLEEEFKVSKITVRNAIKELAQEGYLEKKSGKGTKVIRNTSAT
KLSKGKKFTEVLVEEGYKVQKKLLKAEIVQNEEGTVLFRLFGKESFRIERLYTLNDAPYIHYTHYFSAKMASTDLSDFDL
QSLYDLVEDRGIHLENFRDEFAVGLAPSFVAEALGEKEGTALLKRMRYSYDEVGEVIEYSEGYYNTEMQHYVVNYDV

Sequences:

>Translated_237_residues
MNVTRKKGPLYLQIKNIIRDRILHGVYAIHTNIPSEPQLEEEFKVSKITVRNAIKELAQEGYLEKKSGKGTKVIRNTSAT
KLSKGKKFTEVLVEEGYKVQKKLLKAEIVQNEEGTVLFRLFGKESFRIERLYTLNDAPYIHYTHYFSAKMASTDLSDFDL
QSLYDLVEDRGIHLENFRDEFAVGLAPSFVAEALGEKEGTALLKRMRYSYDEVGEVIEYSEGYYNTEMQHYVVNYDV
>Mature_237_residues
MNVTRKKGPLYLQIKNIIRDRILHGVYAIHTNIPSEPQLEEEFKVSKITVRNAIKELAQEGYLEKKSGKGTKVIRNTSAT
KLSKGKKFTEVLVEEGYKVQKKLLKAEIVQNEEGTVLFRLFGKESFRIERLYTLNDAPYIHYTHYFSAKMASTDLSDFDL
QSLYDLVEDRGIHLENFRDEFAVGLAPSFVAEALGEKEGTALLKRMRYSYDEVGEVIEYSEGYYNTEMQHYVVNYDV

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=235, Percent_Identity=25.1063829787234, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27372; Mature: 27372

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTRKKGPLYLQIKNIIRDRILHGVYAIHTNIPSEPQLEEEFKVSKITVRNAIKELAQE
CCCCCCCCCEEEEHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
GYLEKKSGKGTKVIRNTSATKLSKGKKFTEVLVEEGYKVQKKLLKAEIVQNEEGTVLFRL
CCCCCCCCCCCEEEECCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEE
FGKESFRIERLYTLNDAPYIHYTHYFSAKMASTDLSDFDLQSLYDLVEDRGIHLENFRDE
ECCCCEEEEEEEEECCCCEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
FAVGLAPSFVAEALGEKEGTALLKRMRYSYDEVGEVIEYSEGYYNTEMQHYVVNYDV
HHHCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MNVTRKKGPLYLQIKNIIRDRILHGVYAIHTNIPSEPQLEEEFKVSKITVRNAIKELAQE
CCCCCCCCCEEEEHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
GYLEKKSGKGTKVIRNTSATKLSKGKKFTEVLVEEGYKVQKKLLKAEIVQNEEGTVLFRL
CCCCCCCCCCCEEEECCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEE
FGKESFRIERLYTLNDAPYIHYTHYFSAKMASTDLSDFDLQSLYDLVEDRGIHLENFRDE
ECCCCEEEEEEEEECCCCEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH
FAVGLAPSFVAEALGEKEGTALLKRMRYSYDEVGEVIEYSEGYYNTEMQHYVVNYDV
HHHCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]