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The map label for this gene is ysdC [H]

Identifier: 30264641

GI number: 30264641

Start: 4377902

End: 4378987

Strand: Reverse

Name: ysdC [H]

Synonym: BA_4815

Alternate gene names: 30264641

Gene position: 4378987-4377902 (Counterclockwise)

Preceding gene: 30264642

Following gene: 30264639

Centisome position: 83.77

GC content: 40.24

Gene sequence:

>1086_bases
ATGACAAAATTAGACGAGACATTGACAATGCTAAAAGAATTAACAGATGCACGCGGTATTGCGGGTAACGAGCGTGAACC
ACGTGAAGTAATGAAGAAATATATTGAGCCGTTTGCGGACGAACTTTCTACTGATAATTTAGGAAGTTTAGTTGCGAAAA
AAGTAGGGGAAGAAAACGGCCCGAAAATTATGGTTGCAGGTCATTTAGATGAAGTTGGCTTTATGATTACGCAAATTGAT
GACAAAGGTTTCCTTCGTTTCCAAACAGTTGGTGGCTGGTGGTCACAAGTTATGCTTGCGCAGCGCGTGACAATTGTAAC
GCGTAAAGGAGATGTAACAGGTGTAATCGGTTCAAAACCACCGCATATCTTACCTCCAGAAGCGCGTAAAAAGCCAGTTG
AAATTAAAGACATGTTCATCGATATTGGTGCTTCTAGCCAAGAAGAAGCAATGGAGTGGGGCATACGACCAGGAGATCAA
GTTGTACCTTACTTTGAATTCCAAGTGATGAAGAATGAAAAAATGTTACTTGCAAAAGCATGGGATAACCGAATTGGTTG
TGCAATTGCAATTGACGTATTAAAACAATTAAAAAATGAAAAGCATCCAAACGTTGTATACGGCGTAGGGACTGTACAAG
AAGAAGTCGGTCTTCGTGGTGCGAAAACATCTGCAAACTATATTAAACCAGATATCGCATTCGCAGTAGATGTTGGTATC
GCTGGTGACACACCGGGGGTAACGTCAAAAGAAGCGCAAAGTAAAATGGGTGATGGACCACAGATCATTTTATATGATGC
TTCTGTTATCGGTCATACCGGTTTACGTGACTTTGTAGTTGATGTTGCTGATGAATTACAAATTCCGTATCAATATGATT
CAGTAGCGGGCGGTGGAACGGATGCAGGTGCAATTCATATTGCTGTAAATGGTATTCCGTCTATGGCAATTACCATTGCA
ACGCGTTACATTCATTCTCATGCGGCAATGTTACACCGTGATGACTATGAAAATGCAGTGAAGTTAATTGTAGAAGTTAT
TAAACGTCTTGATAAAGAGGCTGTACATAACATTACATTTAATTAA

Upstream 100 bases:

>100_bases
AAATCATCAGCGTCAAACACAAGGATACTAATTTAATTTTTGAATATTTCAATTTCCTTTTGTATAATGAAGTGACTGAA
GAAAAAGGAGGGTGTTGGCA

Downstream 100 bases:

>100_bases
TAGAAAAAGCGAAGGAGCCTCTCCTTCGCTTTTTATGTTTTAAAAAGGTCGTTCTAATCCCGCTGCAGTATGAGCTCCTA
AAATGATTAAACGAGTTAAT

Product: M42 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MTKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENGPKIMVAGHLDEVGFMITQID
DKGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIGSKPPHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGIRPGDQ
VVPYFEFQVMKNEKMLLAKAWDNRIGCAIAIDVLKQLKNEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGI
AGDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAGGGTDAGAIHIAVNGIPSMAITIA
TRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITFN

Sequences:

>Translated_361_residues
MTKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENGPKIMVAGHLDEVGFMITQID
DKGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIGSKPPHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGIRPGDQ
VVPYFEFQVMKNEKMLLAKAWDNRIGCAIAIDVLKQLKNEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGI
AGDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAGGGTDAGAIHIAVNGIPSMAITIA
TRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITFN
>Mature_360_residues
TKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENGPKIMVAGHLDEVGFMITQIDD
KGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIGSKPPHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGIRPGDQV
VPYFEFQVMKNEKMLLAKAWDNRIGCAIAIDVLKQLKNEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGIA
GDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAGGGTDAGAIHIAVNGIPSMAITIAT
RYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITFN

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=355, Percent_Identity=40.5633802816901, Blast_Score=288, Evalue=5e-79,
Organism=Escherichia coli, GI1788727, Length=352, Percent_Identity=33.2386363636364, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI87082417, Length=343, Percent_Identity=31.1953352769679, Blast_Score=161, Evalue=5e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 39582; Mature: 39451

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENG
CCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
PKIMVAGHLDEVGFMITQIDDKGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIGSKP
CEEEEEECCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHEEEEEECCCEEEECCCCC
PHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGIRPGDQVVPYFEFQVMKNEKMLLAKA
CCCCCCHHCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCEEEEEC
WDNRIGCAIAIDVLKQLKNEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGI
CCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCEEEEEEECC
AGDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAGGGT
CCCCCCCCCHHHHHHCCCCCEEEEEECHHHCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
DAGAIHIAVNGIPSMAITIATRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITF
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
N
C
>Mature Secondary Structure 
TKLDETLTMLKELTDARGIAGNEREPREVMKKYIEPFADELSTDNLGSLVAKKVGEENG
CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
PKIMVAGHLDEVGFMITQIDDKGFLRFQTVGGWWSQVMLAQRVTIVTRKGDVTGVIGSKP
CEEEEEECCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHEEEEEECCCEEEECCCCC
PHILPPEARKKPVEIKDMFIDIGASSQEEAMEWGIRPGDQVVPYFEFQVMKNEKMLLAKA
CCCCCCHHCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCEEEEEC
WDNRIGCAIAIDVLKQLKNEKHPNVVYGVGTVQEEVGLRGAKTSANYIKPDIAFAVDVGI
CCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCEEEEEEECC
AGDTPGVTSKEAQSKMGDGPQIILYDASVIGHTGLRDFVVDVADELQIPYQYDSVAGGGT
CCCCCCCCCHHHHHHCCCCCEEEEEECHHHCCCCHHHHHHHHHHHCCCCEEECCCCCCCC
DAGAIHIAVNGIPSMAITIATRYIHSHAAMLHRDDYENAVKLIVEVIKRLDKEAVHNITF
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]