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The map label for this gene is yahJ [H]

Identifier: 30264562

GI number: 30264562

Start: 4300437

End: 4301681

Strand: Reverse

Name: yahJ [H]

Synonym: BA_4728

Alternate gene names: 30264562

Gene position: 4301681-4300437 (Counterclockwise)

Preceding gene: 30264563

Following gene: 30264561

Centisome position: 82.29

GC content: 38.15

Gene sequence:

>1245_bases
GTGAAATCACAATATTGGTTAACGAATGTAAAACTTGAATGTGGGTACGTATATGAGGAATCACGAATTACAAGTACAGA
AACGGAAATTTGTAGTTTATTTATTGAAGATGGAAAGATTACGAACATATTACCTGGAATTGTATCAGAGCAAGATGGTG
AAGTAGTAAATGCAAATGGTTTACTGGCATTACCAGCATTTGAAGAAATGCATATCCATATTGATAAGACGTATTATGGT
GGACCATGGAAAGCGTGTACACCAGTAAAGAGTATATTCACTCGTATTCATGAGGAGCAAACTATTCTTCCGAAGCAATT
AGAAACTGCAAAGAGTAGAGCGGAGAAAATGTTGCAATTACTTCTTGAAAATGGAGCGACAAATATTCGAACACATTGCA
ATATTGATCCTGTAATTGGTCTTGGGAATTTAGAAGCAACGATTGCGGCACTGGAAACATATAAAGATAAGTTATCAGCA
AAAATTGTAGCATTCCCGCAACACGGTTTGTTACGAAGTAATTCCGTAGGGCTTGTAAAAGACGCTATGCGTATGGGAGC
TCATTTAGTAGGTGGAGTAGACCCAGCTACAGTAGATGGTAATATTGAAAAATCATTGAATACAATTATGGATATTGCAG
TAGAGTTTGATTCAGACATTGATATTCATTTACATGACGCGGATCAACTCGGAACATTTACAATGAAGAGATTAGCTGCA
TTAACAGAAGAAGCAGGGTGGCAAGGAAGAGTTACGATTAGTCATGCTCTTGGACTTGGAGATGTATCTGTAGAAGAAGC
GGGGGAAATGGCTGAACGACTTGCGGCATTAGGTATTGATATAACGTCAACAGTTCCAGTTAGTAGACATGTAATTCCAG
TTCCGTTATTAAATCGTAAAGGTGTAAAAGTTTCGCTAGGAAACGATAGTATAACTGATCATTGGTCTCCGTTTGGGACA
GGAGATATGTTGCAAAAGGCAAATTGTCTAGCGGAGAGATTTAGATGGATTGATGAGCGCTCTTTAGGGAAAGCACTTCA
GTTTATTACGGGTGGGAAATCTATATTAGATGATCAAGGAAATCGTCAATGGCCAAAAATTGGGGATGAAGCAAATATCG
TCTTTACAGAAGCATCATGTTCAGCCGAGGTAGTAGCAAGACAAACAGAGCGCTGTGCGGTTTTATATAAAGGAAATGTT
GTTGCTGGTAGTTTGGAAAAAACGGCTATAAATAATCTTGTTTGA

Upstream 100 bases:

>100_bases
CAGTGTAAAAATGATTTTACACTGATAGAAATTTTTATCTGTTTTTGTTTCGTTTGTAAGTAGAAAAATCATATTGCGAA
GGGAGATTGACAAAGTGAGT

Downstream 100 bases:

>100_bases
GAGGATGATGGAAATGCAAAATGCGTATTGGTTAACGAATGTACGATTAGAAACAGGTTACAAGTTTAATAATGAAGTAG
TTACAGGTACAGAAACAGCT

Product: putative deaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNANGLLALPAFEEMHIHIDKTYYG
GPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKMLQLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKLSA
KIVAFPQHGLLRSNSVGLVKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRLAA
LTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPVSRHVIPVPLLNRKGVKVSLGNDSITDHWSPFGT
GDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDDQGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKGNV
VAGSLEKTAINNLV

Sequences:

>Translated_414_residues
MKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNANGLLALPAFEEMHIHIDKTYYG
GPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKMLQLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKLSA
KIVAFPQHGLLRSNSVGLVKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRLAA
LTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPVSRHVIPVPLLNRKGVKVSLGNDSITDHWSPFGT
GDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDDQGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKGNV
VAGSLEKTAINNLV
>Mature_414_residues
MKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNANGLLALPAFEEMHIHIDKTYYG
GPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKMLQLLLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKLSA
KIVAFPQHGLLRSNSVGLVKDAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRLAA
LTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPVSRHVIPVPLLNRKGVKVSLGNDSITDHWSPFGT
GDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDDQGNRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKGNV
VAGSLEKTAINNLV

Specific function: Unknown

COG id: COG0402

COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786517, Length=407, Percent_Identity=42.5061425061425, Blast_Score=324, Evalue=8e-90,
Organism=Escherichia coli, GI1786531, Length=401, Percent_Identity=25.6857855361596, Blast_Score=111, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45222; Mature: 45222

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNANG
CCCCEEEEEEEEEEEEEEECCCCCCHHHHHEEEEECCCCEEECCCCCCCCCCCCEECCCC
LLALPAFEEMHIHIDKTYYGGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKMLQL
EEEECCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKLSAKIVAFPQHGLLRSNSVGLVK
HHHCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCHHHH
DAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRLAA
HHHHHCHHHHCCCCCCEECCCHHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHHHHHH
LTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPVSRHVIPVPLLNRK
HHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCEEECCCCCCC
GVKVSLGNDSITDHWSPFGTGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDDQG
CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
NRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKGNVVAGSLEKTAINNLV
CCCCCCCCCCCCEEEEECCCCHHHHHHCCCCEEEEEECCEEECCHHHHHHHCCC
>Mature Secondary Structure
MKSQYWLTNVKLECGYVYEESRITSTETEICSLFIEDGKITNILPGIVSEQDGEVVNANG
CCCCEEEEEEEEEEEEEEECCCCCCHHHHHEEEEECCCCEEECCCCCCCCCCCCEECCCC
LLALPAFEEMHIHIDKTYYGGPWKACTPVKSIFTRIHEEQTILPKQLETAKSRAEKMLQL
EEEECCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LLENGATNIRTHCNIDPVIGLGNLEATIAALETYKDKLSAKIVAFPQHGLLRSNSVGLVK
HHHCCCCCEEEECCCCCEEECCCHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCHHHH
DAMRMGAHLVGGVDPATVDGNIEKSLNTIMDIAVEFDSDIDIHLHDADQLGTFTMKRLAA
HHHHHCHHHHCCCCCCEECCCHHHHHHHHHHHHEEECCCCEEEEECCHHHHHHHHHHHHH
LTEEAGWQGRVTISHALGLGDVSVEEAGEMAERLAALGIDITSTVPVSRHVIPVPLLNRK
HHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCEEECCCCCCC
GVKVSLGNDSITDHWSPFGTGDMLQKANCLAERFRWIDERSLGKALQFITGGKSILDDQG
CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
NRQWPKIGDEANIVFTEASCSAEVVARQTERCAVLYKGNVVAGSLEKTAINNLV
CCCCCCCCCCCCEEEEECCCCHHHHHHCCCCEEEEEECCEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]