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The map label for this gene is yahJ [H]

Identifier: 30264561

GI number: 30264561

Start: 4299179

End: 4300423

Strand: Reverse

Name: yahJ [H]

Synonym: BA_4727

Alternate gene names: 30264561

Gene position: 4300423-4299179 (Counterclockwise)

Preceding gene: 30264562

Following gene: 30264560

Centisome position: 82.27

GC content: 38.23

Gene sequence:

>1245_bases
ATGCAAAATGCGTATTGGTTAACGAATGTACGATTAGAAACAGGTTACAAGTTTAATAATGAAGTAGTTACAGGTACAGA
AACAGCTTTGCATCATTTACTTATACAAGATGGAAAGATTGAAAAGATTGTACTTGCGGATGTACCGCTTCAAACAGAAT
ATGAAACGAAAGATGCGAAAGAATTGCTTGTGCTTCCGTCGTTTGTGGAAAATCATTTTCACTTGGATAAGACAAAACTT
GGTGGTCCATGGGAAGCATGTACACCAGTAAAAAATATTATTGAGAGATTAGAGTTAGAACAGCAGGAGTTACCGATTTT
AGCTCAAACAACTGGAGAGAGAGCAGAGTTATTACTAAGAAACATTTTAAATGCTGGTTCGACTCATATTCGAACGCATG
TAAATATTGATCCGTATATCGGTCTTAAAAACTTAGAATCTGTACGTCAAACTTTAGAGAATATGAAAGATGCGTTTACA
TATGAAATCGTAGCATTCCCGCAGCATGGTTTACTTCGTACAGAAGCGCATTCTCTTATGAGAGAAGCGATGAAAATGGG
CGCAACTTTAGTAGGTGGTGTAGATCCAGCTACTGTAGATAATAATATTGAAAAATCACTTTTTGATATGATGGAAATCG
CTGTAGAGGCAAATGCTGATGTTGATTTGCATTTACATGATGCAGGGCATTTAGGTATTTATACAATTAAAAAGTTAGCT
CAGTATACAGAGGAGGCTAGTTGGGACGGACGTGTTGCAGTCAGTCATGCGTTTAGCCTAGGGGATGTATCTAAAGAAGA
AGGAGCAGATATGGCAGACTTATTAGCTGAAAGAGGAATGTCTATTATTACGACAGTACCAATTAACAGAAATATGCCGC
CAGTACCATTACTGACAGAAAAGGGTGTTCCCATTTCTTTAGGTTGCGATAGTATGTTTGATTCATGGGGGCCATTTGGA
AATGCTGATATTTTTGAAAGAGTAGGGCGTTTAGCAGAAAAGTATCGCTGGATGGATGAGAAGTCTTTAGCTTCTTCTTT
AGCGTATATTACAGGTGGAAAAACGCCATTGGATCAAGAAGGAAATCAAGTTTGGCCTAAAGTAGGAGATAAAGCTGATT
TCGTCTTCTTACAAGCTACTTGTTCAGCAGAAGCGATTGCTAGACGAGCAAAGCGACCAGCTGTAATGAGAGACGGAAAA
ATAGTAGCAGGTTCCTTGCAACATGTTCAAGGAGTATTGATTTAA

Upstream 100 bases:

>100_bases
AGACAAACAGAGCGCTGTGCGGTTTTATATAAAGGAAATGTTGTTGCTGGTAGTTTGGAAAAAACGGCTATAAATAATCT
TGTTTGAGAGGATGATGGAA

Downstream 100 bases:

>100_bases
TTTACGTATCTCCCTAATTTATATATTTTTTTTCAAGGGTTCCTAATGAAAGAATAGGAATCCTTCTTTTTTACGAGAAA
AGGAGGGGAATAGGTGACAC

Product: putative deaminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MQNAYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTEYETKDAKELLVLPSFVENHFHLDKTKL
GGPWEACTPVKNIIERLELEQQELPILAQTTGERAELLLRNILNAGSTHIRTHVNIDPYIGLKNLESVRQTLENMKDAFT
YEIVAFPQHGLLRTEAHSLMREAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGIYTIKKLA
QYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMPPVPLLTEKGVPISLGCDSMFDSWGPFG
NADIFERVGRLAEKYRWMDEKSLASSLAYITGGKTPLDQEGNQVWPKVGDKADFVFLQATCSAEAIARRAKRPAVMRDGK
IVAGSLQHVQGVLI

Sequences:

>Translated_414_residues
MQNAYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTEYETKDAKELLVLPSFVENHFHLDKTKL
GGPWEACTPVKNIIERLELEQQELPILAQTTGERAELLLRNILNAGSTHIRTHVNIDPYIGLKNLESVRQTLENMKDAFT
YEIVAFPQHGLLRTEAHSLMREAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGIYTIKKLA
QYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMPPVPLLTEKGVPISLGCDSMFDSWGPFG
NADIFERVGRLAEKYRWMDEKSLASSLAYITGGKTPLDQEGNQVWPKVGDKADFVFLQATCSAEAIARRAKRPAVMRDGK
IVAGSLQHVQGVLI
>Mature_414_residues
MQNAYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTEYETKDAKELLVLPSFVENHFHLDKTKL
GGPWEACTPVKNIIERLELEQQELPILAQTTGERAELLLRNILNAGSTHIRTHVNIDPYIGLKNLESVRQTLENMKDAFT
YEIVAFPQHGLLRTEAHSLMREAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGIYTIKKLA
QYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMPPVPLLTEKGVPISLGCDSMFDSWGPFG
NADIFERVGRLAEKYRWMDEKSLASSLAYITGGKTPLDQEGNQVWPKVGDKADFVFLQATCSAEAIARRAKRPAVMRDGK
IVAGSLQHVQGVLI

Specific function: Unknown

COG id: COG0402

COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786517, Length=405, Percent_Identity=40.2469135802469, Blast_Score=297, Evalue=8e-82,
Organism=Escherichia coli, GI1786531, Length=400, Percent_Identity=25.25, Blast_Score=104, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45898; Mature: 45898

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNAYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTEYETKDAK
CCCCEEEEEEEEECCCEECCEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCH
ELLVLPSFVENHFHLDKTKLGGPWEACTPVKNIIERLELEQQELPILAQTTGERAELLLR
HHEECHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCEEEECCCHHHHHHHH
NILNAGSTHIRTHVNIDPYIGLKNLESVRQTLENMKDAFTYEIVAFPQHGLLRTEAHSLM
HHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHH
REAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGIYTIKKLA
HHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
QYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMPPVPLLTE
HHHHHCCCCCEEEEEEEHHHCCCCHHHCCCHHHHHHHCCCEEEEEECCCCCCCCCCEEEC
KGVPISLGCDSMFDSWGPFGNADIFERVGRLAEKYRWMDEKSLASSLAYITGGKTPLDQE
CCCEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
GNQVWPKVGDKADFVFLQATCSAEAIARRAKRPAVMRDGKIVAGSLQHVQGVLI
CCEECCCCCCCCCEEEEEECCCHHHHHHHHCCCCEECCCEEEECCHHHHCCCCC
>Mature Secondary Structure
MQNAYWLTNVRLETGYKFNNEVVTGTETALHHLLIQDGKIEKIVLADVPLQTEYETKDAK
CCCCEEEEEEEEECCCEECCEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCH
ELLVLPSFVENHFHLDKTKLGGPWEACTPVKNIIERLELEQQELPILAQTTGERAELLLR
HHEECHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCEEEECCCHHHHHHHH
NILNAGSTHIRTHVNIDPYIGLKNLESVRQTLENMKDAFTYEIVAFPQHGLLRTEAHSLM
HHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHH
REAMKMGATLVGGVDPATVDNNIEKSLFDMMEIAVEANADVDLHLHDAGHLGIYTIKKLA
HHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHH
QYTEEASWDGRVAVSHAFSLGDVSKEEGADMADLLAERGMSIITTVPINRNMPPVPLLTE
HHHHHCCCCCEEEEEEEHHHCCCCHHHCCCHHHHHHHCCCEEEEEECCCCCCCCCCEEEC
KGVPISLGCDSMFDSWGPFGNADIFERVGRLAEKYRWMDEKSLASSLAYITGGKTPLDQE
CCCEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
GNQVWPKVGDKADFVFLQATCSAEAIARRAKRPAVMRDGKIVAGSLQHVQGVLI
CCEECCCCCCCCCEEEEEECCCHHHHHHHHCCCCEECCCEEEECCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]