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The map label for this gene is rimM

Identifier: 30263845

GI number: 30263845

Start: 3657373

End: 3657888

Strand: Reverse

Name: rimM

Synonym: BA_3980

Alternate gene names: 30263845

Gene position: 3657888-3657373 (Counterclockwise)

Preceding gene: 30263846

Following gene: 30263844

Centisome position: 69.98

GC content: 34.11

Gene sequence:

>516_bases
ATGACAAAATGGTTTAACGTAGGAAAAATTGTAAATACTCATGGCGTAAAAGGAGAAATTCGTGTGGTTTCTCGTACTGA
CTTTCCAGAAGAGCGATATAAAGTAGGGAATACGTTATACATATCGAATGAAAAAGGTGGAGAGCCTTTCCCAGTAAAGA
TTACTTCTCATCGTCAACATAAAACATTTGATTTATTGACATTTGAAGGATACGGGAATGTAAATGAAGTAGAACAGTTT
AAAGGTTCTCTTTTAAAAGTGCCTGAAGATCAATTAGGTGAACTAGCTGAAGGTGAATATTACTATCATGAAATTATTGG
TTGCAATGTTGTAACGGAAGAAGGAGAAGCGTTAGGGACAATAAAAGAAGTTTTATCTCCTGGTGCAAATGATGTTTGGG
TAATTAAACGTCCAAAAGGTCAAGATTTGTTAATTCCTTATATTGATGATGTTGTGCTTCAAGTTAACATTGAGAATAAA
TTAGTAACCATTCATGTAACGGAAGGGCTACTATAA

Upstream 100 bases:

>100_bases
TATTCCTCTCCCTTTTTTAACATTTAAAGAGAAGTTGCATGTTCCATATGAGAAATGGGGATGCTTAATTTATATAGAAA
CCAGGGGTGACATACTGTTT

Downstream 100 bases:

>100_bases
TGAAAATTGACATTTTAACATTGTTTCCAGATATGTTTACAGGTGTGTTTGGATCTTCAATTTTAAAGAAAGCACAAGAA
AAAGAAGCGGTAGAGCTTCG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQHKTFDLLTFEGYGNVNEVEQF
KGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENK
LVTIHVTEGLL

Sequences:

>Translated_171_residues
MTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQHKTFDLLTFEGYGNVNEVEQF
KGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENK
LVTIHVTEGLL
>Mature_170_residues
TKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQHKTFDLLTFEGYGNVNEVEQFK
GSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGTIKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKL
VTIHVTEGLL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=170, Percent_Identity=27.0588235294118, Blast_Score=74, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BACAA (C3P5P3)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002868079.1
- ProteinModelPortal:   C3P5P3
- SMR:   C3P5P3
- EnsemblBacteria:   EBBACT00000125168
- GeneID:   7850028
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_4004
- GeneTree:   EBGT00050000002368
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19272; Mature: 19141

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQH
CCCEECCCEEEECCCCCEEEEEEEECCCCHHHHCCCCEEEEECCCCCCCCEEEEECCCCC
KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGT
CEEEEEEECCCCCHHHHHHHCCCEEECCHHHHCCCCCCCEEEEEEEECEEEECCCCHHHH
IKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVTEGLL
HHHHHCCCCCCEEEEECCCCCEEEEECCCEEEEEEEECCEEEEEEECCCCC
>Mature Secondary Structure 
TKWFNVGKIVNTHGVKGEIRVVSRTDFPEERYKVGNTLYISNEKGGEPFPVKITSHRQH
CCEECCCEEEECCCCCEEEEEEEECCCCHHHHCCCCEEEEECCCCCCCCEEEEECCCCC
KTFDLLTFEGYGNVNEVEQFKGSLLKVPEDQLGELAEGEYYYHEIIGCNVVTEEGEALGT
CEEEEEEECCCCCHHHHHHHCCCEEECCHHHHCCCCCCCEEEEEEEECEEEECCCCHHHH
IKEVLSPGANDVWVIKRPKGQDLLIPYIDDVVLQVNIENKLVTIHVTEGLL
HHHHHCCCCCCEEEEECCCCCEEEEECCCEEEEEEEECCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA