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The map label for this gene is ymfH [H]

Identifier: 30263792

GI number: 30263792

Start: 3596671

End: 3597957

Strand: Reverse

Name: ymfH [H]

Synonym: BA_3922

Alternate gene names: 30263792

Gene position: 3597957-3596671 (Counterclockwise)

Preceding gene: 30263793

Following gene: 30263791

Centisome position: 68.83

GC content: 33.33

Gene sequence:

>1287_bases
ATGGAGAAAATTGTTTATGAGCAATTAAAAGAGACACTCTATTATGAAAAACTTCCTAATGGATTAGATGTATATATTTT
ACCGAAGCAAGGATTTAATAAAACATTTGCAACGTCTACGACAAAATATGGTTCTGTGGATAATACATTCGTACCACTAG
GTAAAGAAGAAATGATTCGTGTACCTGATGGGATTGCTCATTTTCTTGAGCATAAATTATTTGAAAAAGAAGATCATGAC
GCTTTCCAATTGTTTAGTAAACAAGGGGCTTCCGCGAATGCTTTCACGTCTTTCACAAGAACAGCTTATCTTTTTTCGTG
TACATCAAATGTAGAACAAAATTTAAATACATTGTTAAACTTCGTACAAGAGCCTTACTTTTCTGAAAAAACAGTCGAAA
AAGAGAAGGGGATTATCGGACAAGAAATTCAAATGTATCAAGATAATCCAGATTGGCGCTTGTACTTTGGATTAATTGAT
AGTTTGTTTGTAAAGCACCCGATTAAAATTGATATTGCAGGGACGATCGAGTCTATTAGTAAAATTACGAAAGACCTACT
ATATGAATGTTATGAAACGTTTTATCATCCAAGCAATATGTTAATGTTTGTTGTGGGTGCAATTGATCCAGAGAAAACAA
TGGATTTAGTACATGAAAATCAAGCGAAAAAAGATTATAAAAACCAGCCGGAAATTGTACGTTCATTTGAAGAAGAACCA
GATGAGGTAAATGAAAAGAAGAAAATTATTTCCATGCCTGTACAAACTCCGAAATGTTTAGTTGGTATTAAAGCGACAAA
CTTAAAAGAAAAGGGAGAAGCCCTTTTAAAACAAGAAATTGCGCTTACGTTACTTTTAGATTATTTATTTGGGAAAAGCT
CCGTTCATTACGAATCTTTATATAATGAAGGGCTCATCGATGATACGTTCTCGTATGATTATACAGAAGAGAATAACTTC
GGTTTTGCAATGGTTGGCGGCGATACGAAGCAACCTGATGAGCTGGAAGAGCGTTTGAAAAGTATTTTATTAAACACAAA
TTATAATCAATTAGATGAGGCGGCATTAGAACGAGTAAAGAAAAAGAAAATAGGTGGCTTTTTACGTTCCTTGAATTCAC
CGGAATATATTGCAAATCAATTTACACGATATGCGTTTAATGAATCGAGTCTGTTTGATGCATTGACTGTATTAGAAAGT
CTAACGGTTCAAGATTTACAAGAAGTAGCTCAATTACTATTATCAGAAGAGAAAATGAGTGTTTGCCAAGTTTTACCGAA
AAAATAA

Upstream 100 bases:

>100_bases
TACAGGCATTGAAAGTGTGACGAAAGAAGAGATTGTGAAAGTTGCTAAAAATATTGAACTAGATACAATTTACTTTTTAC
AAGGAACGGAGGGAGAATAA

Downstream 100 bases:

>100_bases
AAGGTTTTATAATAATACCCTCATCTTATCATTGATAAATTGTAAGATGAGGGTATTATTTATTTGTAGGGAAACGATTT
TTTTGAGATAAGAGAGGAAT

Product: zinc protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MEKIVYEQLKETLYYEKLPNGLDVYILPKQGFNKTFATSTTKYGSVDNTFVPLGKEEMIRVPDGIAHFLEHKLFEKEDHD
AFQLFSKQGASANAFTSFTRTAYLFSCTSNVEQNLNTLLNFVQEPYFSEKTVEKEKGIIGQEIQMYQDNPDWRLYFGLID
SLFVKHPIKIDIAGTIESISKITKDLLYECYETFYHPSNMLMFVVGAIDPEKTMDLVHENQAKKDYKNQPEIVRSFEEEP
DEVNEKKKIISMPVQTPKCLVGIKATNLKEKGEALLKQEIALTLLLDYLFGKSSVHYESLYNEGLIDDTFSYDYTEENNF
GFAMVGGDTKQPDELEERLKSILLNTNYNQLDEAALERVKKKKIGGFLRSLNSPEYIANQFTRYAFNESSLFDALTVLES
LTVQDLQEVAQLLLSEEKMSVCQVLPKK

Sequences:

>Translated_428_residues
MEKIVYEQLKETLYYEKLPNGLDVYILPKQGFNKTFATSTTKYGSVDNTFVPLGKEEMIRVPDGIAHFLEHKLFEKEDHD
AFQLFSKQGASANAFTSFTRTAYLFSCTSNVEQNLNTLLNFVQEPYFSEKTVEKEKGIIGQEIQMYQDNPDWRLYFGLID
SLFVKHPIKIDIAGTIESISKITKDLLYECYETFYHPSNMLMFVVGAIDPEKTMDLVHENQAKKDYKNQPEIVRSFEEEP
DEVNEKKKIISMPVQTPKCLVGIKATNLKEKGEALLKQEIALTLLLDYLFGKSSVHYESLYNEGLIDDTFSYDYTEENNF
GFAMVGGDTKQPDELEERLKSILLNTNYNQLDEAALERVKKKKIGGFLRSLNSPEYIANQFTRYAFNESSLFDALTVLES
LTVQDLQEVAQLLLSEEKMSVCQVLPKK
>Mature_428_residues
MEKIVYEQLKETLYYEKLPNGLDVYILPKQGFNKTFATSTTKYGSVDNTFVPLGKEEMIRVPDGIAHFLEHKLFEKEDHD
AFQLFSKQGASANAFTSFTRTAYLFSCTSNVEQNLNTLLNFVQEPYFSEKTVEKEKGIIGQEIQMYQDNPDWRLYFGLID
SLFVKHPIKIDIAGTIESISKITKDLLYECYETFYHPSNMLMFVVGAIDPEKTMDLVHENQAKKDYKNQPEIVRSFEEEP
DEVNEKKKIISMPVQTPKCLVGIKATNLKEKGEALLKQEIALTLLLDYLFGKSSVHYESLYNEGLIDDTFSYDYTEENNF
GFAMVGGDTKQPDELEERLKSILLNTNYNQLDEAALERVKKKKIGGFLRSLNSPEYIANQFTRYAFNESSLFDALTVLES
LTVQDLQEVAQLLLSEEKMSVCQVLPKK

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

Organism=Escherichia coli, GI1787770, Length=240, Percent_Identity=26.25, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71999683, Length=427, Percent_Identity=23.8875878220141, Blast_Score=72, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: 3.4.99.- [C]

Molecular weight: Translated: 49163; Mature: 49163

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKIVYEQLKETLYYEKLPNGLDVYILPKQGFNKTFATSTTKYGSVDNTFVPLGKEEMIR
CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEE
VPDGIAHFLEHKLFEKEDHDAFQLFSKQGASANAFTSFTRTAYLFSCTSNVEQNLNTLLN
CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHEEHHHHHHHHHHHHHHH
FVQEPYFSEKTVEKEKGIIGQEIQMYQDNPDWRLYFGLIDSLFVKHPIKIDIAGTIESIS
HHHCCCCCHHHHHHHCCCCCCHHHEECCCCCCEEHHHHHHHHHHCCCCEEEECHHHHHHH
KITKDLLYECYETFYHPSNMLMFVVGAIDPEKTMDLVHENQAKKDYKNQPEIVRSFEEEP
HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
DEVNEKKKIISMPVQTPKCLVGIKATNLKEKGEALLKQEIALTLLLDYLFGKSSVHYESL
HHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
YNEGLIDDTFSYDYTEENNFGFAMVGGDTKQPDELEERLKSILLNTNYNQLDEAALERVK
HCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
KKKIGGFLRSLNSPEYIANQFTRYAFNESSLFDALTVLESLTVQDLQEVAQLLLSEEKMS
HHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VCQVLPKK
HHHHCCCC
>Mature Secondary Structure
MEKIVYEQLKETLYYEKLPNGLDVYILPKQGFNKTFATSTTKYGSVDNTFVPLGKEEMIR
CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEE
VPDGIAHFLEHKLFEKEDHDAFQLFSKQGASANAFTSFTRTAYLFSCTSNVEQNLNTLLN
CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHEEHHHHHHHHHHHHHHH
FVQEPYFSEKTVEKEKGIIGQEIQMYQDNPDWRLYFGLIDSLFVKHPIKIDIAGTIESIS
HHHCCCCCHHHHHHHCCCCCCHHHEECCCCCCEEHHHHHHHHHHCCCCEEEECHHHHHHH
KITKDLLYECYETFYHPSNMLMFVVGAIDPEKTMDLVHENQAKKDYKNQPEIVRSFEEEP
HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
DEVNEKKKIISMPVQTPKCLVGIKATNLKEKGEALLKQEIALTLLLDYLFGKSSVHYESL
HHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
YNEGLIDDTFSYDYTEENNFGFAMVGGDTKQPDELEERLKSILLNTNYNQLDEAALERVK
HCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
KKKIGGFLRSLNSPEYIANQFTRYAFNESSLFDALTVLESLTVQDLQEVAQLLLSEEKMS
HHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VCQVLPKK
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]