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The map label for this gene is xlyB [H]

Identifier: 30263648

GI number: 30263648

Start: 3460735

End: 3461667

Strand: Reverse

Name: xlyB [H]

Synonym: BA_3767

Alternate gene names: 30263648

Gene position: 3461667-3460735 (Counterclockwise)

Preceding gene: 30263649

Following gene: 30263647

Centisome position: 66.22

GC content: 38.48

Gene sequence:

>933_bases
ATGGAAATTAGAAAAAAATTAGTTGACCCAAGTAAATATTGTATAAAGTGTCCTTATACAATGAATCCGGAATTCATTAC
AGTTCACAATACTTACAACGATGCTACAGCAGAAAATGAAGTAGCTTATATGATTCGTAATGATAATCAGGTTTCATTTC
ATATTGCAGTAGATGATAAAGAAGCAGTACAAGGAATCCCTTTGGAGCGTAACGCCTGGCATACTGGCGACGGAAACGGG
AACGGTAATCGTAAATCTATCGGAGTTGAAATTTGCTACTCTTTAAGCGGTGGAGATAGATACTATAAAGCGGAAGACAA
TGCAGCTATCGTTGTAGCTCAACTAATGAAACAGTACAATATTCCAATTAAGAAAGTCCGTACACATCAATCATGGAGTG
GGAAGTACTGTCCTCATCGTATGTTGGCAGAAGGACGTTGGAATAATTTTATTGAAAGAGTTCAAAATGCATACAATGGA
GATGGTAAAGTAACTCCTACACTTATCCCACCGTCAACTAACGGGACAGGTATTGCGTATATTGAGGGGAATGGCATCAA
CCTTCGTAAAGGTCTAGGTACTGGATATGGGGTTATTCGTCAATTAGGTAAAGGTGAGTCCTACGAAGTATGGGGACAAT
CAAATGGATGGTTAAACCTTGGTGGCAATCAGTGGATTTATAATGATTCATCATACATTCGTTATACAGGAGAAAGCACA
CCAACAAGTTCACAATCAGTCAATAATGGTGTAGGAATAGTTACTATTACAGCAGATGTATTGCGTGTTCGTAAAGGTCC
GGGAACTAATTATGACATTGTAAAAAATGTGTACCAAGGAGAACAGTATCAGTCGTGGGGATATAGAGATGGTTGGTATA
ATGTGGGTGGAGACCAATGGGTTTCAGGTGAATATGTGAAGTTTGAAGATTAA

Upstream 100 bases:

>100_bases
CTGGTCGAATGGGCATCCCGTTACCGCAAGCTTTAACAAATGCAGTTGAAATTTTAGGTGGTAAACAAAAACAAGAAGAG
AAAAAGGGAGATGTTCTATA

Downstream 100 bases:

>100_bases
AGTAAGAGCCGTCATAATGACGGCTTTTTTTATTTTATAGCAATTATTTAACCATACCTGTTGATTCGAATAAACAGGTA
TGATATAATTATATATGTAA

Product: prophage LambdaBa01, N-acetylmuramoyl-L-alanine amidase family protein 2

Products: NA

Alternate protein names: Autolysin; Cell wall hydrolase [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MEIRKKLVDPSKYCIKCPYTMNPEFITVHNTYNDATAENEVAYMIRNDNQVSFHIAVDDKEAVQGIPLERNAWHTGDGNG
NGNRKSIGVEICYSLSGGDRYYKAEDNAAIVVAQLMKQYNIPIKKVRTHQSWSGKYCPHRMLAEGRWNNFIERVQNAYNG
DGKVTPTLIPPSTNGTGIAYIEGNGINLRKGLGTGYGVIRQLGKGESYEVWGQSNGWLNLGGNQWIYNDSSYIRYTGEST
PTSSQSVNNGVGIVTITADVLRVRKGPGTNYDIVKNVYQGEQYQSWGYRDGWYNVGGDQWVSGEYVKFED

Sequences:

>Translated_310_residues
MEIRKKLVDPSKYCIKCPYTMNPEFITVHNTYNDATAENEVAYMIRNDNQVSFHIAVDDKEAVQGIPLERNAWHTGDGNG
NGNRKSIGVEICYSLSGGDRYYKAEDNAAIVVAQLMKQYNIPIKKVRTHQSWSGKYCPHRMLAEGRWNNFIERVQNAYNG
DGKVTPTLIPPSTNGTGIAYIEGNGINLRKGLGTGYGVIRQLGKGESYEVWGQSNGWLNLGGNQWIYNDSSYIRYTGEST
PTSSQSVNNGVGIVTITADVLRVRKGPGTNYDIVKNVYQGEQYQSWGYRDGWYNVGGDQWVSGEYVKFED
>Mature_310_residues
MEIRKKLVDPSKYCIKCPYTMNPEFITVHNTYNDATAENEVAYMIRNDNQVSFHIAVDDKEAVQGIPLERNAWHTGDGNG
NGNRKSIGVEICYSLSGGDRYYKAEDNAAIVVAQLMKQYNIPIKKVRTHQSWSGKYCPHRMLAEGRWNNFIERVQNAYNG
DGKVTPTLIPPSTNGTGIAYIEGNGINLRKGLGTGYGVIRQLGKGESYEVWGQSNGWLNLGGNQWIYNDSSYIRYTGEST
PTSSQSVNNGVGIVTITADVLRVRKGPGTNYDIVKNVYQGEQYQSWGYRDGWYNVGGDQWVSGEYVKFED

Specific function: Autolysins are involved in some important biological processes such as cell separation, cell-wall turnover, competence for genetic transformation, formation of the flagella and sporulation [H]

COG id: COG5632

COG function: function code M; N-acetylmuramoyl-L-alanine amidase

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002502
- InterPro:   IPR002477
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01510 Amidase_2; PF01476 LysM; PF01471 PG_binding_1 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 34746; Mature: 34746

Theoretical pI: Translated: 7.48; Mature: 7.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIRKKLVDPSKYCIKCPYTMNPEFITVHNTYNDATAENEVAYMIRNDNQVSFHIAVDDK
CCCHHHHCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCEEEEEEEECCH
EAVQGIPLERNAWHTGDGNGNGNRKSIGVEICYSLSGGDRYYKAEDNAAIVVAQLMKQYN
HHHCCCCCCCCCEECCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCEEHHHHHHHHHC
IPIKKVRTHQSWSGKYCPHRMLAEGRWNNFIERVQNAYNGDGKVTPTLIPPSTNGTGIAY
CCHHHEECCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEE
IEGNGINLRKGLGTGYGVIRQLGKGESYEVWGQSNGWLNLGGNQWIYNDSSYIRYTGEST
EECCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCEEECCCCEEEECCCCEEEECCCCC
PTSSQSVNNGVGIVTITADVLRVRKGPGTNYDIVKNVYQGEQYQSWGYRDGWYNVGGDQW
CCCCCCCCCCEEEEEEEEEHHHEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCE
VSGEYVKFED
ECCCEEEECC
>Mature Secondary Structure
MEIRKKLVDPSKYCIKCPYTMNPEFITVHNTYNDATAENEVAYMIRNDNQVSFHIAVDDK
CCCHHHHCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCEEEEEEEECCH
EAVQGIPLERNAWHTGDGNGNGNRKSIGVEICYSLSGGDRYYKAEDNAAIVVAQLMKQYN
HHHCCCCCCCCCEECCCCCCCCCCEEEEEEEEEEECCCCEEEEECCCCEEHHHHHHHHHC
IPIKKVRTHQSWSGKYCPHRMLAEGRWNNFIERVQNAYNGDGKVTPTLIPPSTNGTGIAY
CCHHHEECCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEE
IEGNGINLRKGLGTGYGVIRQLGKGESYEVWGQSNGWLNLGGNQWIYNDSSYIRYTGEST
EECCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCEEECCCCEEEECCCCEEEECCCCC
PTSSQSVNNGVGIVTITADVLRVRKGPGTNYDIVKNVYQGEQYQSWGYRDGWYNVGGDQW
CCCCCCCCCCEEEEEEEEEHHHEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCE
VSGEYVKFED
ECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]