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The map label for this gene is sigI [H]

Identifier: 30263387

GI number: 30263387

Start: 3203726

End: 3204448

Strand: Reverse

Name: sigI [H]

Synonym: BA_3483

Alternate gene names: 30263387

Gene position: 3204448-3203726 (Counterclockwise)

Preceding gene: 30263388

Following gene: 30263386

Centisome position: 61.3

GC content: 34.16

Gene sequence:

>723_bases
GTGTTGAGTTTAGTAATGAAGATCTTAAGAAAACCGAAAATAGAAGATATCGTATGTAACATACAAAATAACGAAGAAGA
TAAAGAAGCTTTTATCGTACAGTATCAGCCGTTTATTAGAAAATCAATCTCGTCTGTCTGCCGCCGATATATTACAGAAC
AGGATGATGAATATAGTATTGGATTGTTTGCGTTTAACGAAGCAATTGAACAGTATTCATATAAAAAAGGGAAATCTTTT
CTAGCGTTTGCTGATCTTCTTATAAAAAGAGATGTAATTGACTATATACGCAAGGAGTCTAAGCATAACCTTGTCTTTTT
AAAAGAAGATGAGCAAGAGGAAATGTTAGAAATGCAAGTATCGCTTACGGAGTATATGAAAGAAATAGAGAATGGTAACC
GTAAGGAAGAAATTCTCCATTTTCAAAGTGTGTTAGCTGATTTTAAAATCACATTTTCAGAGCTTGCTAAAGAATCTCCT
AAGCATCGTGATACGCGTGAGCACTTAATAGAAATTGTAAAGGTGATTATAAAAGAAGAGGAAATGATGGAGGAGCTGTT
CCGGAAGAAAAAGTTACCGCTTAAACATATTGAACCGCGTGTTAGGGTAAGTCGCAAAACGTTGGAGCGGCATAGAAAAT
ATATCATTGCAATGTGTATTATCTTTGCAAACAACTATACATACATTCTTGATTATATAAGGGGAGGGAAGCATGATGAA
TAA

Upstream 100 bases:

>100_bases
TGAACAACAAGAAGACAAGCCTAAAGAAACTGTGGTTGAATGGTCACTTGTTTAGTGACCATTTTTCTATTTCAAGCAGA
AGGAGGGAGAGAGATTACCC

Downstream 100 bases:

>100_bases
AGGAATTGTGATGGATATAAAAAAACATAGCGTAGTTGTTTTAACGCCAAATGGAGAGTTTATTACGTGTAAAAGAAAAG
GGGATTCTTGCATGATTGGA

Product: putative RNA polymerase sigma factor SigI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MLSLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEQYSYKKGKSF
LAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQVSLTEYMKEIENGNRKEEILHFQSVLADFKITFSELAKESP
KHRDTREHLIEIVKVIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE

Sequences:

>Translated_240_residues
MLSLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEQYSYKKGKSF
LAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQVSLTEYMKEIENGNRKEEILHFQSVLADFKITFSELAKESP
KHRDTREHLIEIVKVIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE
>Mature_240_residues
MLSLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEQYSYKKGKSF
LAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQVSLTEYMKEIENGNRKEEILHFQSVLADFKITFSELAKESP
KHRDTREHLIEIVKVIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 28823; Mature: 28823

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSI
CHHHHHHHHCCCCHHHHEECCCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHCCCCCCCEE
GLFAFNEAIEQYSYKKGKSFLAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
SLTEYMKEIENGNRKEEILHFQSVLADFKITFSELAKESPKHRDTREHLIEIVKVIIKEE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
EMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE
HHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLSLVMKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSI
CHHHHHHHHCCCCHHHHEECCCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHCCCCCCCEE
GLFAFNEAIEQYSYKKGKSFLAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
SLTEYMKEIENGNRKEEILHFQSVLADFKITFSELAKESPKHRDTREHLIEIVKVIIKEE
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
EMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE
HHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]