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The map label for this gene is yddE [C]

Identifier: 30263374

GI number: 30263374

Start: 3189972

End: 3190871

Strand: Reverse

Name: yddE [C]

Synonym: BA_3469

Alternate gene names: 30263374

Gene position: 3190871-3189972 (Counterclockwise)

Preceding gene: 30263375

Following gene: 30263372

Centisome position: 61.04

GC content: 36.44

Gene sequence:

>900_bases
ATGAAAACTATAAACGTATTTCATTATGACGCATTTACAAATAAACCGAATATGGGGAATCCAGCAGGTATTGTATTAGA
TGCAGATGGATTAACAGAAGAGGAAATGCAACGTATTGCTGAAAAAGTTGGATTTAACGAAACGTCGTTCGTACTTTCTT
CAGAAGTAGCAGATATAAGAATGCGTTATTTTACACCTGGTTATGAAATGGATTTATGTGGACACGGAACAGTTGGGACT
ATTTATGCCTTGCGTGAAAGAGGTTTATTAGAAGAGAAAGCAAGCCTTACGATTGAAACGAAGGCCGGGATTTTACCAAT
ACAAATAGGTGTAAATGAAAATGGAGAAACCTTTATTAAAATGAGGCAGACAGCACCTCAGTTTAAAGATTTTGCAGGTT
CAAAAGAAGAATTAGCTCATAGTATTGGTTTAGAAGTAAATGATTTAGATGTAAGTTTACCGATTGTATATGGAAGTACG
GGGAACTGGACCGTAATTGTACCGGTTAAAAATCTAGATGTATGTGAGAGAATGAAACCTAACAATGAGGTGTTTCCATC
GGTATTAAAAGAAATACCTAACGCTTCTATTCACCCAATTTGTCTAGAAACTTATGACGAAAAGGTACATATGCATGGGC
GTCATTTCTCATCAGCTTATGCTGGAACGATTGAAGATCCCGTGACAGGAACAGCTTCAGGTGTAATGGGAGCATATTAT
GCGACGTATGTGGAGAAAGATTTTGACCATGAAATGGAGTTAATCGTTGAACAAGGGCAAGAAATACATAAAGATGGTCG
TGTAACGGTATATGTAACGAAAGATGTAGAAAGTGAGAAGTTACAAATAGATATTGCTGGAACAGCGGTATATGTGAAAG
AGTTTGAAGTTTTAATATAA

Upstream 100 bases:

>100_bases
ATGAAAAGATGCAGGGGATATTTTTGAGAAATAATTGTTCGTTGAAAACGGAGATAGAGCTTTATTATAAAATTTTTAAT
GAGGGTTAGGAGAAAAGAAA

Downstream 100 bases:

>100_bases
AGTGAAACTTTAATCAGTGAGGGGCATCCCCACTGATTATCAGCCCTCACCAATCGGGCTGCCCAGCGAATAGCGGGATA
AAAAAGAAAGCCCGGCATAC

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETSFVLSSEVADIRMRYFTPGYEMDLCGHGTVGT
IYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGST
GNWTVIVPVKNLDVCERMKPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
ATYVEKDFDHEMELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVLI

Sequences:

>Translated_299_residues
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETSFVLSSEVADIRMRYFTPGYEMDLCGHGTVGT
IYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGST
GNWTVIVPVKNLDVCERMKPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
ATYVEKDFDHEMELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVLI
>Mature_299_residues
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETSFVLSSEVADIRMRYFTPGYEMDLCGHGTVGT
IYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIKMRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGST
GNWTVIVPVKNLDVCERMKPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
ATYVEKDFDHEMELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVLI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=298, Percent_Identity=33.8926174496644, Blast_Score=142, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6321818, Length=295, Percent_Identity=26.7796610169492, Blast_Score=83, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 33236; Mature: 33236

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETSFVLSSEVADIR
CCEEEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHEEEECHHHHEE
MRYFTPGYEMDLCGHGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIK
EEEECCCCCEEECCCCCHHHHHHHHHCCCCCHHCCEEEEECCCEEEEEEECCCCCCEEEE
MRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPVKNLDVCERMKP
EECCCCHHHHHCCCHHHHHHHHCCEEECCEEEEEEEECCCCCEEEEEEECCCCHHHHCCC
NNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
CCCHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
ATYVEKDFDHEMELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVLI
HHHHHCCCCHHHHHHHHCCHHHHCCCCEEEEEECCCCCCEEEEEEECEEEEEEEEEEEC
>Mature Secondary Structure
MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETSFVLSSEVADIR
CCEEEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCHHEEEECHHHHEE
MRYFTPGYEMDLCGHGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVNENGETFIK
EEEECCCCCEEECCCCCHHHHHHHHHCCCCCHHCCEEEEECCCEEEEEEECCCCCCEEEE
MRQTAPQFKDFAGSKEELAHSIGLEVNDLDVSLPIVYGSTGNWTVIVPVKNLDVCERMKP
EECCCCHHHHHCCCHHHHHHHHCCEEECCEEEEEEEECCCCCEEEEEEECCCCHHHHCCC
NNEVFPSVLKEIPNASIHPICLETYDEKVHMHGRHFSSAYAGTIEDPVTGTASGVMGAYY
CCCHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
ATYVEKDFDHEMELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVKEFEVLI
HHHHHCCCCHHHHHHHHCCHHHHCCCCEEEEEECCCCCCEEEEEEECEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]